View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3974_low_10 (Length: 280)
Name: NF3974_low_10
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3974_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 278
Target Start/End: Complemental strand, 30025278 - 30025021
Alignment:
| Q |
21 |
agcccaaggaggtttcaaccttccatccaacaatgcctacacaatccaacttccaccgctttggtcaggtcgcatatgggcccgcgacaactgctccttc |
120 |
Q |
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| T |
30025278 |
agcccaaggaggtttcaaccttccatctaacaatgcctacacactccaacttccaccgctttggtcaggtcgcatatgggcccgcgacaactgctccttc |
30025179 |
T |
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| Q |
121 |
gacgctacaggccacggtcactgcaccactggagactgcggtggtatactctcatgtaacggccttggtggcacgccaccggcaacactagccgaattca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30025178 |
gacgctacaggccacggtcactgcaccactggagactgcggtggtatactctcatgtaacggccttggtggcacgccaccggcaacactagccgaattca |
30025079 |
T |
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| Q |
221 |
ctctcggcaacgaccaagatttctacgacgttagtcttgtggacggttacaatcttcc |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30025078 |
ctctcggcaacgaccaagatttctacgacgttagtcttgtggacggttacaatcttcc |
30025021 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 27975688 - 27975645
Alignment:
| Q |
235 |
caagatttctacgacgttagtcttgtggacggttacaatcttcc |
278 |
Q |
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| T |
27975688 |
caagatttctacgacgtgagtctcgtcgacggttacaatcttcc |
27975645 |
T |
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