View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3974_low_12 (Length: 250)
Name: NF3974_low_12
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3974_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 53403666 - 53403903
Alignment:
| Q |
1 |
ttttgtgattaaatacacacccacagtcaggcccaacccaatacctttcaatttcatcatgttgagtctgagagacacaacactttcttatagccagaat |
100 |
Q |
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| T |
53403666 |
ttttgtgatgaaatacacacccacagtcaggcccaacccaatacatttcaatttcatcatgttgagtctgagagacacaacactttcttatagccagaat |
53403765 |
T |
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| Q |
101 |
cccaacataaa--gtgtttatgtgtgcccaaatagagtgttcaaacgcttgtgaccaagaaagcattttgcctatttttcaattgacgaatactggtgta |
198 |
Q |
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| T |
53403766 |
cccaacataaagtgtgtgtatgtgtgcccaaatagagtgttcaaacgcttgtgaccaagaaagcattttgcctatttttcaattgacgaatactggtgta |
53403865 |
T |
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| Q |
199 |
tactattgctgcatatatacatacataccttcattgtctctg |
240 |
Q |
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| T |
53403866 |
tactattgctgc----atacatacataccttcaatgtctctg |
53403903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 62 - 240
Target Start/End: Complemental strand, 53375273 - 53375099
Alignment:
| Q |
62 |
ttgagtctgagagacacaacactttcttatagccagaatcccaacataaagtgtttatgtgtgcccaaatagagtgttcaaacgcttgtgaccaagaaag |
161 |
Q |
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| T |
53375273 |
ttgagtctgagagacacaacactttcttatagccagaatcccaacataaagtgtgtatgtgtgcccaaataaagtgttcaaacgcttgtgaccaagaaag |
53375174 |
T |
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| Q |
162 |
cattttgcctatttttcaattgacgaatactggtgtatactattgctgcatatatacatacataccttcattgtctctg |
240 |
Q |
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| T |
53375173 |
cattttgcctatttttcaattgacaaatactggtgtatactatagctgc----atacatacataccttcattgtctctg |
53375099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 53376033 - 53375974
Alignment:
| Q |
1 |
ttttgtgattaaatacacacccacagtcaggcccaacccaatacctttcaatttcatcat |
60 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
53376033 |
ttttgtgataaaatacacacccacagtcaggcccaacccaatgcctttaaatttcatcat |
53375974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 11392324 - 11392358
Alignment:
| Q |
62 |
ttgagtctgagagacacaacactttcttatagcca |
96 |
Q |
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| T |
11392324 |
ttgagtctgagagacacaacactttcttatagcca |
11392358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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