View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3974_low_13 (Length: 249)
Name: NF3974_low_13
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3974_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 34951636 - 34951852
Alignment:
| Q |
13 |
cagagacaaggagttgtgatgttggtgtaagagcatatccttctttggtttcatcaattttgacaattgcaaagaaatcaatgtgtgctaataagcgcat |
112 |
Q |
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| T |
34951636 |
cagagacaaggagttgtgatgttggtgtaagagcatatccttctttggtttcatcaattttgacaattgcaaagaaatcaatgtgtgctaataagcgcat |
34951735 |
T |
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| Q |
113 |
gagtcgacggacgcatgtttcttttgattgtggaaccttaagagctgaaatgagctcagaaagagtcatggcaggaccatggttgtggatgatatctggt |
212 |
Q |
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| T |
34951736 |
gagtcgacggacgcatgtttcttttgattgtggaaccttaagagatgaaatgagctcagaaagagtcatggcatggccatggttgtggatgatatctggt |
34951835 |
T |
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| Q |
213 |
attttaaggtcaagtgc |
229 |
Q |
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| T |
34951836 |
attttaaggtcaagtgc |
34951852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 34947166 - 34947381
Alignment:
| Q |
14 |
agagacaaggagttgtgatgttggtgtaagagcatatccttctttggtttcatcaattttgacaattgcaaagaaatcaatgtgtgctaataagcgcatg |
113 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34947166 |
agagacaaggagttgtgatgttggagtaagagtatatccttctttggtttcatcaattttgacaattgcaaagaaatcaatgtgtgctaacaagcgcatt |
34947265 |
T |
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| Q |
114 |
agtcgacggacgcatgtttcttttgattgtggaaccttaagagctgaaatgagctcagaaagagtcatggcaggaccatggttgtggatgatatctggta |
213 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||| |
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| T |
34947266 |
agtcgaccgacgcatgtttcttttgattgtggaaccttaagagctgaaatgagctcagaaagagtaatggcttggcgatggttgtggatgatatctggta |
34947365 |
T |
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| Q |
214 |
ttttaaggtcaagtgc |
229 |
Q |
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| T |
34947366 |
ttttaaggtcaagtgc |
34947381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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