View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3974_low_14 (Length: 244)
Name: NF3974_low_14
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3974_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 14857028 - 14856837
Alignment:
| Q |
1 |
acttattctcttccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaactcc--------aat |
92 |
Q |
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| T |
14857028 |
acttattctcttacaccccatttctctatttcctctcaaaccaccacaaatttgccattagaagtgaagtacaatgggtggagaactccacaagaagaat |
14856929 |
T |
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| Q |
93 |
ggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaagacttaatagcagttttaa-cccctaactttc |
183 |
Q |
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| T |
14856928 |
ggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaattggaaggtttaatagcagttataaccccctaactttc |
14856837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 152
Target Start/End: Original strand, 19967195 - 19967353
Alignment:
| Q |
2 |
cttattctcttccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaactcc--------aatg |
93 |
Q |
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| T |
19967195 |
cttattctcttccaccccatttctctatttcctttcaaaccaccacaaatttgccactagaagtgaagtacaatgggtggagaaggccgcaagatgaatg |
19967294 |
T |
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| Q |
94 |
gaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa |
152 |
Q |
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| T |
19967295 |
gaagaaatgggtcaacaaattacgaccaaagtttgaatttttatggatcaaaactggaa |
19967353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 20021080 - 20020925
Alignment:
| Q |
5 |
attctcttccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaactcc--------aatggaa |
96 |
Q |
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| T |
20021080 |
attctcttccaccccatttctctatttcctctcaaaccaccacaaatttgccattagaagttaagtattatgggtggagagctccacaagaagaatggaa |
20020981 |
T |
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| Q |
97 |
gaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa |
152 |
Q |
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| T |
20020980 |
gaaatgggtcaacaaattaagaccaaagtttgaatttctatggatcaaaactggaa |
20020925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 19962601 - 19962663
Alignment:
| Q |
90 |
aatggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa |
152 |
Q |
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| T |
19962601 |
aatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaa |
19962663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 20027802 - 20027740
Alignment:
| Q |
90 |
aatggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa |
152 |
Q |
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| T |
20027802 |
aatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaa |
20027740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 19962507 - 19962579
Alignment:
| Q |
13 |
ccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaa |
85 |
Q |
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| T |
19962507 |
ccaccccttttctctatttcctctcaaaccaccacaaattcgccattacaagtaaagtacagtggatggagaa |
19962579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 20027896 - 20027824
Alignment:
| Q |
13 |
ccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaa |
85 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||| |||| | ||||| |||| ||||||||||| ||||||| |
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| T |
20027896 |
ccaccccttttctctattttctctcaaaccaccaccaattcgccattacaagtaaagtacaatggatggagaa |
20027824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 266421 - 266388
Alignment:
| Q |
154 |
acttaatagcagttttaacccctaactttctcaa |
187 |
Q |
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| T |
266421 |
acttaatatcagttttaacccctaactttctcaa |
266388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 35615484 - 35615451
Alignment:
| Q |
150 |
gaagacttaatagcagttttaacccctaactttc |
183 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
35615484 |
gaagacttaatagcagttttcacccctaactttc |
35615451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 44356708 - 44356676
Alignment:
| Q |
155 |
cttaatagcagttttaacccctaactttctcaa |
187 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
44356708 |
cttaatagcagttttagcccctaactttctcaa |
44356676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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