View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3974_low_15 (Length: 243)
Name: NF3974_low_15
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3974_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 50985291 - 50985176
Alignment:
| Q |
115 |
agaatagaataacatgtttttatggnnnnnnnaatgaccgatatattacaaactcaaagtaaaaggaatagtagatgaactttacaatatttgaaattta |
214 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50985291 |
agaatagaataacatgtttttatggtttttttaatgaccgatatattacaaactcaaagtaaaaggaatagtagttgaactttacaatatttgaaattta |
50985192 |
T |
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| Q |
215 |
cattactcactaaaat |
230 |
Q |
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|||||||||||||||| |
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| T |
50985191 |
cattactcactaaaat |
50985176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 51088425 - 51088310
Alignment:
| Q |
115 |
agaatagaataacatgtttttatggnnnnnnnaatgaccgatatattacaaactcaaagtaaaaggaatagtagatgaactttacaatatttgaaattta |
214 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51088425 |
agaatagaataacatgtttttatggtttttttaatgaccgatatattacaaactcaaagtaaaaggaatagtagttgaactttacaatatttgaaattta |
51088326 |
T |
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| Q |
215 |
cattactcactaaaat |
230 |
Q |
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|||||||||||||||| |
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| T |
51088325 |
cattactcactaaaat |
51088310 |
T |
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