View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3974_low_17 (Length: 237)

Name: NF3974_low_17
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3974_low_17
NF3974_low_17
[»] chr3 (8 HSPs)
chr3 (15-237)||(14855985-14856207)
chr3 (15-230)||(19968050-19968262)
chr3 (15-237)||(19743386-19743605)
chr3 (15-237)||(20020016-20020235)
chr3 (15-120)||(20026837-20026942)
chr3 (15-99)||(19963473-19963557)
chr3 (152-230)||(20026965-20027043)
chr3 (152-230)||(19963357-19963435)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 14855985 - 14856207
Alignment:
Q  15 caaattgcattgcgacacgatgagggaagtacttctctttacattccataccaac--caactcacaaactttcaaacatcaagaaaacgacgctaactct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  14855985 caaattgcattgcgacacgatgagggaagtacttctctttacattccataccaacaccaactcacaaactttcaaacatcaagaaaacgacgctaactct 14856084  T
Q  113 tcatctaaacaaggactatcatagtatctccacatatccttttcattat-aaacctcaatgcatggtgatttctcgtatggcttccacagaaattcatta 211  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  14856085 tcatctaaacaaggactatca---tatctccacatatccttttcattataaaacctcaatgcatggtgaattctcgtatggctttcacagaaattcatta 14856181  T
Q  212 ttaaatcctgcacaatccatgacctt 237  Q
    ||||||||||||||||||||||||||    
T  14856182 ttaaatcctgcacaatccatgacctt 14856207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 19968262 - 19968050
Alignment:
Q  15 caaattgcattgcgacacgatgagggaagtacttctctttacattccataccaaccaactcacaaactttcaaacatcaagaaaacgacgctaactcttc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||| ||||||||||    
T  19968262 caaattgcattgcgacacgatgagggaagtacttctctttacatcccataccaaccaactcacaaaccctcaaacatcgagaaaacgacactaactcttc 19968163  T
Q  115 atctaaacaaggactatcatagtatctccacatatccttttcattataaacctcaatgcatggtgatttctcgtatggcttccacagaaattcattatta 214  Q
    ||||||||||||| |||||    ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| | ||||| |||| |||| | |    
T  19968162 atctaaacaaggattatca---catctccacatatccttttcattatagacctcaatgcatggtgaattctcatatggttgccacaaaaatccattttca 19968066  T
Q  215 aatcctgcacaatcca 230  Q
    || |||||||||||||    
T  19968065 aaacctgcacaatcca 19968050  T

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Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 19743386 - 19743605
Alignment:
Q  15 caaattgcattgcgacacgatgagggaagtacttctctttacattccataccaaccaactcacaaactttcaaacatcaagaaaacgacgctaactcttc 114  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||| |||||||||     
T  19743386 caaattgcattgcgacacgatgatggaagtacttctctttacatcccataccaaccaactcacaaaccctcaaacatcgagaaaacgactctaactcttt 19743485  T
Q  115 atctaaacaaggactatcatagtatctccacatatccttttcattataaacctcaatgcatggtgatttctcgtatggcttccacagaaattcattatta 214  Q
    ||||||||||||| || ||    ||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| | ||||| |||| |||    |    
T  19743486 atctaaacaaggattacca---catctccacatatccttttcattatagacctcaatacatggtgaattctcatatggttgccacaaaaatccatctcca 19743582  T
Q  215 aatcctgcacaatccatgacctt 237  Q
    || ||||||||||||||||||||    
T  19743583 aaacctgcacaatccatgacctt 19743605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 20020016 - 20020235
Alignment:
Q  15 caaattgcattgcgacacgatgagggaagtacttctctttacattccataccaaccaactcacaaactttcaaacatcaagaaaacgacgctaactcttc 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||  ||||||||| | |||||||| |||||||||     
T  20020016 caaattgcattgcgacacgatgaggaaagtacttctctttacatcccataccaaccaactcacaaaccctcaaacatcgaaaaaacgactctaactcttt 20020115  T
Q  115 atctaaacaaggactatcatagtatctccacatatccttttcattataaacctcaatgcatggtgatttctcgtatggcttccacagaaattcattatta 214  Q
    ||||||||||||| || ||    ||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| | ||||| |||| |||    |    
T  20020116 atctaaacaaggattacca---catctccacatatccttttcattatagacctcaatacatggtgaattctcatatggttgccacaaaaatccatctcca 20020212  T
Q  215 aatcctgcacaatccatgacctt 237  Q
    || ||||||||||||||||||||    
T  20020213 aaacctgcacaatccatgacctt 20020235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 20026837 - 20026942
Alignment:
Q  15 caaattgcattgcgacacgatgagggaagtacttctctttacattccataccaaccaactcacaaactttcaaacatcaagaaaacgacgctaactcttc 114  Q
    |||||||||| || |||||||| ||||||||||||||||| ||| |||||||||| |||||||| ||  ||||||||| |||||||||    ||||||||    
T  20026837 caaattgcatagcaacacgatgcgggaagtacttctctttgcatcccataccaacaaactcacataccctcaaacatcgagaaaacgatagcaactcttc 20026936  T
Q  115 atctaa 120  Q
    ||||||    
T  20026937 atctaa 20026942  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 19963557 - 19963473
Alignment:
Q  15 caaattgcattgcgacacgatgagggaagtacttctctttacattccataccaaccaactcacaaactttcaaacatcaagaaaa 99  Q
    |||||||||| || |||||||| ||||||||||||||||| ||| |||| ||||| |||||||| ||  ||||||||| ||||||    
T  19963557 caaattgcatagcaacacgatgcgggaagtacttctctttgcatcccatgccaacaaactcacataccctcaaacatcgagaaaa 19963473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 20026965 - 20027043
Alignment:
Q  152 ttttcattataaacctcaatgcatggtgatttctcgtatggcttccacagaaattcattattaaatcctgcacaatcca 230  Q
    ||||||||||| ||||||||||| ||||| ||||| || || ||||||| |||| ||||  ||||||||||||||||||    
T  20026965 ttttcattatagacctcaatgcacggtgaattctcataaggtttccacaaaaatccatttctaaatcctgcacaatcca 20027043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 19963435 - 19963357
Alignment:
Q  152 ttttcattataaacctcaatgcatggtgatttctcgtatggcttccacagaaattcattattaaatcctgcacaatcca 230  Q
    ||||||| ||| || |||||||| ||||| ||||| || || ||||||| |||| ||||  ||||||||||||||||||    
T  19963435 ttttcatcatagacatcaatgcacggtgaattctcataaggtttccacaaaaatccatttctaaatcctgcacaatcca 19963357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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