View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3974_low_4 (Length: 411)
Name: NF3974_low_4
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3974_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Original strand, 6769920 - 6770312
Alignment:
| Q |
8 |
aagcatagggtagcaagcaaggtccggggggtgcagaaatggcagaagactgactgtaagagcacgtggggggtgactggggacattacattacattacg |
107 |
Q |
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| T |
6769920 |
aagcatggggtagcaagcaaggtccggggggtgcagaaatggcagaagactgactgtaagagcacgtggggggtgactggggacattacattacattacg |
6770019 |
T |
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| Q |
108 |
ttgttaaattcaaaggtgaaaagctgaacaacacaagtagtagggtctggtgttgctgcaaccaacgacaataattcccaaacaattaaggaaaattcta |
207 |
Q |
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| T |
6770020 |
ttgttaaattcaaaggtgaaaagctgaacaacacaagtagtagggtctggtgttgctgcaaccaacgacaataattcccaaacaattaaggaaaattcta |
6770119 |
T |
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| Q |
208 |
ctcatccttaatatggcaacatgagttcaaatctacatgttggttttgtgttttgatttgaaaatatacttaaccataattcatatttataccgtccaaa |
307 |
Q |
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| T |
6770120 |
ctcatccttaatatggcaacatgagttcaaatctacatgttggttttgtgttttgatttgaaaatatacttaaccataattcatatttataccgtccaaa |
6770219 |
T |
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| Q |
308 |
aatgcattttcagaaccatgttaaagctcttcacaagcaagggatgaaaattggtatcaattaaataaaagggaaatgatagtttaatttgat |
400 |
Q |
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| T |
6770220 |
aatgcattttcagaaccatgttaaagctcttcacaagcaagggatgaaaattggtatcaattaaataaaagggaaatgatagtttaatttgat |
6770312 |
T |
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