View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3974_low_6 (Length: 321)

Name: NF3974_low_6
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3974_low_6
NF3974_low_6
[»] chr2 (23 HSPs)
chr2 (1-304)||(9329371-9329674)
chr2 (76-257)||(9321810-9321987)
chr2 (94-269)||(9060265-9060440)
chr2 (96-257)||(8572671-8572831)
chr2 (97-269)||(9316832-9317004)
chr2 (147-283)||(12018134-12018270)
chr2 (147-283)||(10348599-10348732)
chr2 (147-257)||(9292747-9292857)
chr2 (147-283)||(10336607-10336740)
chr2 (141-256)||(7612716-7612831)
chr2 (154-257)||(10372701-10372804)
chr2 (158-268)||(9357924-9358034)
chr2 (82-283)||(7114803-7114998)
chr2 (142-257)||(10353964-10354079)
chr2 (142-256)||(12011808-12011922)
chr2 (147-286)||(9275316-9275452)
chr2 (109-257)||(12005347-12005495)
chr2 (133-256)||(8578731-8578854)
chr2 (147-283)||(9283394-9283527)
chr2 (133-249)||(17565320-17565436)
chr2 (177-256)||(9365415-9365494)
chr2 (180-255)||(14551140-14551215)
chr2 (147-252)||(11986745-11986850)
[»] scaffold0667 (1 HSPs)
scaffold0667 (147-257)||(5278-5388)
[»] chr3 (2 HSPs)
chr3 (106-257)||(37463341-37463492)
chr3 (138-239)||(39428716-39428816)
[»] chr5 (1 HSPs)
chr5 (140-285)||(36225539-36225686)
[»] chr4 (2 HSPs)
chr4 (142-257)||(26575698-26575813)
chr4 (180-283)||(561966-562066)
[»] chr8 (1 HSPs)
chr8 (147-252)||(41965942-41966047)
[»] chr1 (3 HSPs)
chr1 (162-251)||(29467060-29467149)
chr1 (149-257)||(29442581-29442689)
chr1 (149-251)||(29424039-29424141)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 9329674 - 9329371
Alignment:
Q  1 tactagaagtgaagcacgctagaaaacttacttcaacagaaactaaaacactaaatcaaccaaaacgtagcagttccacacaaccctagaacgaaccttc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329674 tactagaagtgaagcacgctagaaaacttacttcaacaaaaactaaaaccctaaatcaaccaaaacgtagcagttccacacaaccctagaacgaaccttc 9329575  T
Q  101 cttccttccaatggcgggtgatgttcttctgccggaattgttcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttct 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||     
T  9329574 cttccttccaatggcgggtgatgttcttctgccggaattgttaacggaaatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttca 9329475  T
Q  201 aaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329474 aaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatc 9329375  T
Q  301 tcta 304  Q
    ||||    
T  9329374 tcta 9329371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 76 - 257
Target Start/End: Complemental strand, 9321987 - 9321810
Alignment:
Q  76 ccacacaaccctagaacgaaccttccttccttccaatggcgggtgatgttcttctgccggaattgttcacggaaatcctctcccgcttaccggtaaaatc 175  Q
    ||||||||||||||||||||||||||||||    ||||||| ||||||||| || ||||||||||||   ||||||||||||||||||||||||||||||    
T  9321987 ccacacaaccctagaacgaaccttccttcc----aatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatc 9321892  T
Q  176 acttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||  |||||||| |||||||||    
T  9321891 acttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaat 9321810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 94 - 269
Target Start/End: Original strand, 9060265 - 9060440
Alignment:
Q  94 aaccttccttccttccaatggcgggtgatgttcttctgccggaattgttcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatc 193  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||| |  |  | |||||| ||||||||||||||||  |||||||||||| |||||||||    
T  9060265 aaccctccttccttccaatggcggctgatgttcttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatc 9060364  T
Q  194 aacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaat 269  Q
    |||||| ||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| ||||||||    
T  9060365 aacttcaaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaat 9060440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 96 - 257
Target Start/End: Original strand, 8572671 - 8572831
Alignment:
Q  96 ccttccttccttccaatggcgggtgatgttcttctgccggaattgttcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaa 195  Q
    |||||||||||||||||||||||||||||||||| | ||||| |  |||| |||||| |||||||| |||| ||||| |||||||||| |||||||||||    
T  8572671 ccttccttccttccaatggcgggtgatgttcttccgtcggaaatagtcactgaaatcttctcccgcataccagtaaa-tcacttctccgattccgatcaa 8572769  T
Q  196 cttctaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 257  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  8572770 cttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaat 8572831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 9317004 - 9316832
Alignment:
Q  97 cttccttccttccaatggcgggtgatgttcttctgccggaattgttcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaac 196  Q
    |||| |||||||||||||||| ||| | ||||| ||||||| |  || | |||||| |||||| |||||| |||||||||||||||| ||||||||||||    
T  9317004 cttctttccttccaatggcggctgacggtcttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaac 9316905  T
Q  197 ttctaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaat 269  Q
    ||| ||||||||||||||  |||| ||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  9316904 ttcaaaatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaat 9316832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 147 - 283
Target Start/End: Original strand, 12018134 - 12018270
Alignment:
Q  147 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttc 246  Q
    |||||| ||||||||||||| |||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| ||||||||||| || ||||    
T  12018134 gaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttc 12018233  T
Q  247 acctcaaaaataattccctcaatttcaacctcatcct 283  Q
    | ||||||||    |||||||||||||||||||||||    
T  12018234 aactcaaaaactcatccctcaatttcaacctcatcct 12018270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 283
Target Start/End: Complemental strand, 10348732 - 10348599
Alignment:
Q  147 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttc 246  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||| ||| ||||  |||||||    
T  10348732 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttc 10348633  T
Q  247 acctcaaaaataattccctcaatttcaacctcatcct 283  Q
    ||||   ||| ||||| || |||||||||||||||||    
T  10348632 acct---aaaaaattctctaaatttcaacctcatcct 10348599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 147 - 257
Target Start/End: Complemental strand, 9292857 - 9292747
Alignment:
Q  147 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttc 246  Q
    |||||| |||||||| |||| |||||||||||||||  ||||||||||| ||| ||||||||||||||| |||||||||| |||| ||||||||||||||    
T  9292857 gaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttc 9292758  T
Q  247 acctcaaaaat 257  Q
    |||||||||||    
T  9292757 acctcaaaaat 9292747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 147 - 283
Target Start/End: Complemental strand, 10336740 - 10336607
Alignment:
Q  147 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttc 246  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| ||||| ||||  |||||||    
T  10336740 gaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttc 10336641  T
Q  247 acctcaaaaataattccctcaatttcaacctcatcct 283  Q
    ||||  ||   |||||||||||||| |||||||||||    
T  10336640 accttcaa---aattccctcaattttaacctcatcct 10336607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 7612831 - 7612716
Alignment:
Q  141 ttcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcacta 240  Q
    ||||| ||||||||||| |||||||||||| || | || |||| ||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||| |    
T  7612831 ttcactgaaatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaa 7612732  T
Q  241 accttcacctcaaaaa 256  Q
    ||||||||||||||||    
T  7612731 accttcacctcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 10372804 - 10372701
Alignment:
Q  154 tctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaa 253  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||  |||||||||||||||| ||||  |||||||||||| |    
T  10372804 tctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctcca 10372705  T
Q  254 aaat 257  Q
    ||||    
T  10372704 aaat 10372701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 158 - 268
Target Start/End: Complemental strand, 9358034 - 9357924
Alignment:
Q  158 ccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 257  Q
    ||||||||| ||||||||||||||||  ||  |||||||||| ||||||||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  9358034 ccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T
Q  258 aattccctcaa 268  Q
    |||||| ||||    
T  9357934 aattccatcaa 9357924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 82 - 283
Target Start/End: Original strand, 7114803 - 7114998
Alignment:
Q  82 aaccctagaacgaaccttccttccttccaatggcgggtgatgttcttctgccggaattgttcacggaaatcctctcccgcttaccggtaaaatcacttct 181  Q
    |||||||||||||||||| | ||||||||||||||| ||||   |||| ||||||| |  |  | |||||| |||| ||| |||| |||  |||||||||    
T  7114803 aaccctagaacgaaccttgcctccttccaatggcggctgat---cttccgccggaaatactatccgaaatcttctctcgcctaccagtacgatcacttct 7114899  T
Q  182 ccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatc 281  Q
     | ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||  |||||||| || |||   |||||| ||||||||||| |||||    
T  7114900 tcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaa---aattccttcaatttcaacttcatc 7114996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 10354079 - 10353964
Alignment:
Q  142 tcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaa 241  Q
    |||| |||||||| |||||||||||||||| ||||||||||  ||||||||||||||| |||||| |||||||| ||||||||||| |||| ||||  ||    
T  10354079 tcaccgaaatcctttcccgcttaccggtaatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaa 10353980  T
Q  242 ccttcacctcaaaaat 257  Q
    ||||||||||| ||||    
T  10353979 ccttcacctcagaaat 10353964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 12011808 - 12011922
Alignment:
Q  142 tcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaa 241  Q
    |||| |||||| ||||||||||||    | |||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||    
T  12011808 tcaccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaa 12011907  T
Q  242 ccttcacctcaaaaa 256  Q
     ||||||||||||||    
T  12011908 tcttcacctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 286
Target Start/End: Complemental strand, 9275452 - 9275316
Alignment:
Q  147 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttc 246  Q
    |||||| ||||||| ||||| ||| |||||||||||  |||||||||||  || ||||||||||||||  | || ||||||||||||||||  |||||||    
T  9275452 gaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttc 9275353  T
Q  247 acctcaaaaataattccctcaatttcaacctcatccttca 286  Q
    | ||||||   ||||||||||||||||||||||| |||||    
T  9275352 atctcaaa---aattccctcaatttcaacctcattcttca 9275316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 109 - 257
Target Start/End: Original strand, 12005347 - 12005495
Alignment:
Q  109 caatggcgggtgatgttcttctgccggaattgttcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcact 208  Q
    |||||||| ||||||||||||   | ||| |  |||| |||||| |||||||||||||   | |||||||||||| |||||| ||||||||  |||| ||    
T  12005347 caatggcgagtgatgttcttccttcagaaatactcaccgaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgct 12005446  T
Q  209 taaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 257  Q
    |||||||||||||||||| ||||||||||| |||||||| || ||||||    
T  12005447 taaatccataatcgattctcacaacttcaccaaccttcatctaaaaaat 12005495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 133 - 256
Target Start/End: Original strand, 8578731 - 8578854
Alignment:
Q  133 cggaattgttcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaa 232  Q
    ||||||||||||  || ||||||||||||||||||||| |||| ||||||| ||||||||||| |||||||||||||  |||| | || ||||||||||     
T  8578731 cggaattgttcatcgatatcctctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacac 8578830  T
Q  233 cttcactaaccttcacctcaaaaa 256  Q
    |||||| || | | ||||||||||    
T  8578831 cttcaccaaacattacctcaaaaa 8578854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 283
Target Start/End: Original strand, 9283394 - 9283527
Alignment:
Q  147 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttc 246  Q
    |||||| ||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  |||| |||| ||||| ||||| ||||  |||||||    
T  9283394 gaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttc 9283493  T
Q  247 acctcaaaaataattccctcaatttcaacctcatcct 283  Q
    ||||||||   | ||||||||| ||||| ||||||||    
T  9283494 acctcaaa---agttccctcaacttcaaactcatcct 9283527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 249
Target Start/End: Original strand, 17565320 - 17565436
Alignment:
Q  133 cggaattgttcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaa 232  Q
    ||||||| ||||| ||||||||||| |||||||| ||| |||| || |||| | |||||||||| || |||||||||||||   |||| |||||||| ||    
T  17565320 cggaattattcactgaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataa 17565419  T
Q  233 cttcactaaccttcacc 249  Q
    |||||| ||||||||||    
T  17565420 cttcaccaaccttcacc 17565436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 9365494 - 9365415
Alignment:
Q  177 cttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaa 256  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||||| |||| |||||| ||||| || ||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa 9365415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 14551215 - 14551140
Alignment:
Q  180 ctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaa 255  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||  || |||||||| ||||    
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctaaaaa 14551140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 11986745 - 11986850
Alignment:
Q  147 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttc 246  Q
    |||||| ||||||||||||    | |||||||||||| |||||| ||||||||  |||| |||||||||||||| ||||| ||||||||||| || ||||    
T  11986745 gaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatcttc 11986844  T
Q  247 acctca 252  Q
    ||||||    
T  11986845 acctca 11986850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 147 - 257
Target Start/End: Complemental strand, 5388 - 5278
Alignment:
Q  147 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttc 246  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||  |||||||    
T  5388 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttc 5289  T
Q  247 acctcaaaaat 257  Q
    ||| |||||||    
T  5288 accgcaaaaat 5278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 37463492 - 37463341
Alignment:
Q  106 ttccaatggcgggtgatgttcttctgccggaattgttcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatc 205  Q
    |||||||||||| ||| | ||||| ||||||| |  || | |||||||||||||| ||||| ||| |||||||||||| ||||||||||||||| |||||    
T  37463492 ttccaatggcggatgacggtcttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatc 37463393  T
Q  206 acttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 257  Q
    |||||||||  |||||||||| ||||||||||  |||||||| |||||||||    
T  37463392 acttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaat 37463341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 39428816 - 39428716
Alignment:
Q  138 ttgttcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttca 237  Q
    |||||||| |||||||||||||||||||||||  |||| || |||||||||||||||||||| |||| | |||||||| ||||| |||||||||||||||    
T  39428816 ttgttcaccgaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaaatgagttaaatccttaatc-attcccacaacttca 39428718  T
Q  238 ct 239  Q
    ||    
T  39428717 ct 39428716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 140 - 285
Target Start/End: Complemental strand, 36225686 - 36225539
Alignment:
Q  140 gttcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcact 239  Q
    |||||| |||||||||||||||||||  ||  |||| || |||| ||||||||||||||| ||||||||||||||  |||||||||| ||||||||||||    
T  36225686 gttcaccgaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcact 36225587  T
Q  240 aaccttcacctcaaaa--ataattccctcaatttcaacctcatccttc 285  Q
    || |||||||||||||  | || ||| |||| ||||||||||||||||    
T  36225586 aatcttcacctcaaaattaaaactccttcaacttcaacctcatccttc 36225539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 26575813 - 26575698
Alignment:
Q  142 tcacggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaa 241  Q
    |||| |||||| ||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| |||| ||||  ||    
T  26575813 tcaccgaaatcttctcccgtttaccggtaatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaa 26575714  T
Q  242 ccttcacctcaaaaat 257  Q
    ||||||||||| ||||    
T  26575713 ccttcacctcagaaat 26575698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 562066 - 561966
Alignment:
Q  180 ctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctca 279  Q
    |||| |||||||| || ||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||| |||||||    
T  562066 ctccgattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaa---aactccctcaattttaacctca 561970  T
Q  280 tcct 283  Q
    ||||    
T  561969 tcct 561966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 41965942 - 41966047
Alignment:
Q  147 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttc 246  Q
    |||||| ||||||  ||||||||||||||| |||||| |||||||||||| || |||||||||  |||| |||||||||||||||||||||  |||||||    
T  41965942 gaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttc 41966041  T
Q  247 acctca 252  Q
    ||||||    
T  41966042 acctca 41966047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 29467060 - 29467149
Alignment:
Q  162 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctc 251  Q
    ||||||||| |||| || |||| |||||| ||||| || ||||||||| ||||| |||||||||||||||||||||  || |||||||||    
T  29467060 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctc 29467149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 29442581 - 29442689
Alignment:
Q  149 aatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttcac 248  Q
    ||||||||| |  ||||||| | |||| || |||| |||||| ||||| || ||||||||| ||||| ||||||||||||| |||||||  || ||||||    
T  29442581 aatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcac 29442680  T
Q  249 ctcaaaaat 257  Q
    ||| |||||    
T  29442681 ctccaaaat 29442689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 29424141 - 29424039
Alignment:
Q  149 aatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcccacaacttcactaaccttcac 248  Q
    ||||||||| |  ||||||||| |||| || |||| |||||| ||||| || ||||||||| ||||  ||||||||||||||| |||||  || ||||||    
T  29424141 aatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatctctaatcgattcccacagcttcatcaagcttcac 29424042  T
Q  249 ctc 251  Q
    |||    
T  29424041 ctc 29424039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University