View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3975_high_2 (Length: 633)
Name: NF3975_high_2
Description: NF3975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3975_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 621
Target Start/End: Original strand, 39710526 - 39711121
Alignment:
| Q |
11 |
cagagattatatttgctttagcgcagaacttgtttgtcacatacgaagtttgaattatttgcaacgtggaatttgtcgaaaagtgagaacataaaaattt |
110 |
Q |
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| T |
39710526 |
cagagattatatttgctttagcgcagaacttgtttgtcacatacgaagtttgaattatttgcaacgtggaatttgtggaaaagtgagaacataaaaattt |
39710625 |
T |
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| Q |
111 |
gaagaaatgtttctgaaaactgtcaggcggttattgaacatgcgaaacagctgctgctgtttggatggctggtagcacataggtgacattgagatgtctg |
210 |
Q |
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| T |
39710626 |
gaagaaatgtttctgaaaactatcaggcggttattgaacgtgtgaaacagctgctgctctttggatggctggtagcacataggtgacattgagtcgtgtg |
39710725 |
T |
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| Q |
211 |
atatttatattgttcaaccataatatcacaactgtatgnnnnnnnnnnnnntatttgtgagagatagaaaaaatcacttgtggttagccaatatcacgcc |
310 |
Q |
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| T |
39710726 |
acatttatactgttcaaccataatatcacaactgtataaaaaaataaaaaatacttgtgagagatagaaacaa-cacttgtggttagccaatatcac--- |
39710821 |
T |
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| Q |
311 |
aatatcacatgacattggcatccaaatactatccctagatggctagtgcaaacagctgcagagtaagcatgggatggatgccattgttactaattaatgt |
410 |
Q |
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| T |
39710822 |
--------at-acattgacacccaaatgctacccctagatggctagtgcaaacagctgcagagtaagcatgggatggatgccattgttactaat----gt |
39710908 |
T |
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| Q |
411 |
gcatattgtgggaaatataacagatggcagaagtgctataacgcagcaatctcaatccctgtgtcaaaaaccgagtcttagaagaa--gtaagtgcaatg |
508 |
Q |
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| T |
39710909 |
gcagattgtgggaaatataacagatggcagaagtgctataacgcagcgctctcaacccctttgtcaaaaaccgagtcttagaagaattgtaagtgcaatg |
39711008 |
T |
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| Q |
509 |
tagatgtgtcgttttcggactctctgaaccgtgttggatttggtatgtgtcttcgagatgacacttagaattttgtgaaagccaagacgatgtggactag |
608 |
Q |
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| T |
39711009 |
tagatgtgtcgttttcgaactctctgaaccgtgttggatttagtatgtgtcttcgagatgacactgagaattttgtgaaagccaagacgatgcggactag |
39711108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 604
Target Start/End: Complemental strand, 22278015 - 22277953
Alignment:
| Q |
542 |
ttggatttggtatgtgtcttcgagatgacacttagaattttgtgaaagccaagacgatgtgga |
604 |
Q |
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| T |
22278015 |
ttggatttggcatgtgtcttcgagacgacatcgagaattttgtgaaagccaagatgatgtgga |
22277953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 15662444 - 15662354
Alignment:
| Q |
76 |
gtggaatttgtcgaaaagtgagaacataaaaatttgaagaaatgtttctgaaaactgtcaggcggttattgaacatgcgaaacagctgctg |
166 |
Q |
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| T |
15662444 |
gtggagtttgtggaaaagtcggaacataaaaatttggaaaaatggttccgaacactgtcatgcggtgattgaacatccgaaacaactgctg |
15662354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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