View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3975_high_4 (Length: 478)
Name: NF3975_high_4
Description: NF3975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3975_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 27356283 - 27356745
Alignment:
| Q |
1 |
gtaaaaagctaggaagaaaacatgcactgcacc-gccttagaatccctcaaatgtcataaaacaattcctgaaacagtttcatctgatctggaggcagag |
99 |
Q |
| |
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||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27356283 |
gtaaaaagctaggaagaaaacatgcaccgccttagaaatagaatccctcaaatgtcataaaacaattcctgaaacagtttcatctgatctggaggcagag |
27356382 |
T |
|
| Q |
100 |
caattgccaaagataagctaccatcatttgttgagctcggaatgatgaaagataacccctcatatgcaatcccaccaggtcccatgaatatgggtcttcc |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27356383 |
caattgccaaagataagctaccatcatttgttgagctcggaatgatgaaagataacccctcatatgcaatcccaccaggtcccatgaatatgggtcttcc |
27356482 |
T |
|
| Q |
200 |
ccaaccaaagtcagcatcatggattggtaaccttgcccagctagtgataccaagatttggacacttaaaagtatgtgcaccacgaacaagagctttcaaa |
299 |
Q |
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|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27356483 |
ccaaccaaagtcagcttcatagattggtaaccttgcccagctagtgataccaagatttggacacttaaaagtatgtgcaccacgaacaagagctttcaaa |
27356582 |
T |
|
| Q |
300 |
tcaggttgtagctcaagatagtccaaagcagatctcaaataatcattatccatttgtaacaatgcattgtggattctgctagcagcataccatgttggtt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27356583 |
tcaggttgtagctcaagatagtccaaagcagatctcaaataatcattatccatttgtaacaatgcattgtggattctgctagcagcataccatgttggtt |
27356682 |
T |
|
| Q |
400 |
ttgacattaaatctcctgctactgctattggagtagttgtgaatatcacattgccaaagtaac |
462 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27356683 |
ttgacattaaatctactgctactgctattggagtagttgtgaatatcacattgccaaagtaac |
27356745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 45410880 - 45410418
Alignment:
| Q |
1 |
gtaaaaagctaggaagaaaacatgcactgcacc-gccttagaatccctcaaatgtcataaaacaattcctgaaacagtttcatctgatctggaggcagag |
99 |
Q |
| |
|
||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45410880 |
gtaaaaagctaggaagaaaacatgcaccgccttagaaatagaatccctcaaatgtcataaaacaattcctgaaacagtttcatctgatctggaggcagac |
45410781 |
T |
|
| Q |
100 |
caattgccaaagataagctaccatcatttgttgagctcggaatgatgaaagataacccctcatatgcaatcccaccaggtcccatgaatatgggtcttcc |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410780 |
caattgccaaagataagctaccatcatttgttgagctcggaatgatgaaagataacccctcatatgcaatcccaccaggtcccatgaatatgggtcttcc |
45410681 |
T |
|
| Q |
200 |
ccaaccaaagtcagcatcatggattggtaaccttgcccagctagtgataccaagatttggacacttaaaagtatgtgcaccacgaacaagagctttcaaa |
299 |
Q |
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|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45410680 |
ccaaccaaagtcagcttcatagattggtaaccttgcccagctagtgataccaagatttggacacttaaaagtatgtgcaccacgaacaagagctttcaaa |
45410581 |
T |
|
| Q |
300 |
tcaggttgtagctcaagatagtccaaagcagatctcaaataatcattatccatttgtaacaatgcattgtggattctgctagcagcataccatgttggtt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410580 |
tcaggttgtagctcaagatagtccaaagcagatctcaaataatcattatccatttgtaacaatgcattgtggattctgctagcagcataccatgttggtt |
45410481 |
T |
|
| Q |
400 |
ttgacattaaatctcctgctactgctattggagtagttgtgaatatcacattgccaaagtaac |
462 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45410480 |
ttgacattaaatctactgctactgctattggagtagttgtgaatatcacattgccaaagtaac |
45410418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 96 - 462
Target Start/End: Complemental strand, 1130757 - 1130391
Alignment:
| Q |
96 |
agagcaattgccaaagataagctaccatcatttgttgagctcggaatgatgaaagataacccctcatatgcaatcccaccaggtcccatgaatatgggtc |
195 |
Q |
| |
|
||||||||||||| |||||| || |||||||||| |||||| ||||| |||||||| | ||| ||||| ||||||||||||||||||||||| || || | |
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|
| T |
1130757 |
agagcaattgccacagataaacttccatcatttgctgagcttggaattatgaaagaaagcccttcataagcaatcccaccaggtcccatgaaaataggcc |
1130658 |
T |
|
| Q |
196 |
ttccccaaccaaagtcagcatcatggattggtaaccttgcccagctagtgataccaagatttggacacttaaaagtatgtgcaccacgaacaagagcttt |
295 |
Q |
| |
|
||||||||||||| ||||||||||| || || | ||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| || |
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|
| T |
1130657 |
ttccccaaccaaaatcagcatcatgtatcggaagcctagcccaactagtaataccaagattcggacacttgaaagtatgtgcaccgcgaacaagagcctt |
1130558 |
T |
|
| Q |
296 |
caaatcaggttgtagctcaagatagtccaaagcagatctcaaataatcattatccatttgtaacaatgcattgtggattctgctagcagcataccatgtt |
395 |
Q |
| |
|
| ||||||||||||||||||| | || | ||| ||||||||||| || || |||||| | |||| || ||||| ||||| || ||||||||||||||| |
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|
| T |
1130557 |
aagatcaggttgtagctcaagaaaatcaagagctgatctcaaatactcgttgtccattcgcgacaacgcgttgtgaattctacttgcagcataccatgtt |
1130458 |
T |
|
| Q |
396 |
ggttttgacattaaatctcctgctactgctattggagtagttgtgaatatcacattgccaaagtaac |
462 |
Q |
| |
|
||||| | ||| | ||| ||||||| ||||| || || |||||||||||||||||||| ||||||| |
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|
| T |
1130457 |
ggtttcgtcatgagatcacctgctatagctataggtgttgttgtgaatatcacattgccgaagtaac |
1130391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 174 - 462
Target Start/End: Original strand, 31965192 - 31965477
Alignment:
| Q |
174 |
ccaggtcccatgaatatgggtcttccccaaccaaagtcagcatcatggattggtaaccttgcccagctagtgataccaagatttggacacttaaaagtat |
273 |
Q |
| |
|
|||||||||||||| || || |||||||||||||| |||||||||| |||||| ||| ||||||| ||| |||| |||||||||||||||||| | || |
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| T |
31965192 |
ccaggtcccatgaaaattggccttccccaaccaaaatcagcatcatagattggaaactttgcccaactaatgatcgcaagatttggacacttaacattag |
31965291 |
T |
|
| Q |
274 |
g--tgcaccacgaacaagagctttcaaatcaggttgtagctcaagatagtccaaagcagatctcaaataatcattatccatttgtaacaatgcattgtgg |
371 |
Q |
| |
|
| ||| | || |||| | | |||| |||||| ||| ||||| || | ||||||| ||| || |||| |||||| | |||||||||||||| |
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|
| T |
31965292 |
ggttgc-----ggggaatagctcttatatcatgttgtaactctagataatcaatagcagatttcatgtattcatcgtccattcgcaacaatgcattgtga |
31965386 |
T |
|
| Q |
372 |
attctgctagcagcataccatgttggttttgacattaaatctcctgctactgctattggagtagttgtgaatatcacattgccaaagtaac |
462 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || | ||| | ||||| ||||| || || |||| ||||||||||||||| ||||||| |
|
|
| T |
31965387 |
attctgcttgcagcataccatgttggttttgaaatgagatcacttgctagagctataggtgtggttgagaatatcacattgccgaagtaac |
31965477 |
T |
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