View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3975_high_5 (Length: 357)
Name: NF3975_high_5
Description: NF3975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3975_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 25 - 357
Target Start/End: Original strand, 41490649 - 41490982
Alignment:
| Q |
25 |
ctttaagcttactttcttaacctctttaaagtggacttataggaaaattgcttaacttaattttctcttattattaaaatagattatatacaagcacnnn |
124 |
Q |
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| T |
41490649 |
ctttaagcttactttcttaacctctttaaagtggacttataggaaaattgcttaacttaattttctcttattattaaaatagattatatacgagcacttt |
41490748 |
T |
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| Q |
125 |
nnnnagggtttatatataatcaattatgatgataattgtggagctgcaaattagttatttattcaaacatggttttgccaatttattcgcccattatcta |
224 |
Q |
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| T |
41490749 |
ttttagggtttatatataatcaattatgatgataattgtggagctgcaaattagttatttattcaaacatggttttgccaatttattcgcccattatcta |
41490848 |
T |
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| Q |
225 |
tacacttctaattctacnnnnnnnnccttatcattgagatctatcaaacaaacaccatttaacattcaagtcatttaagct-aaaataagtggtggggta |
323 |
Q |
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| T |
41490849 |
tacacttctaattctactattttttccttatcattgagatctatcaaacaaaaaccatttaagattcaagtcatttaagctaaaaataagtggtggggta |
41490948 |
T |
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| Q |
324 |
caaaccggcgaaagccgacagggacgattccggc |
357 |
Q |
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|||||||||||||| | ||||||||||||||||| |
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| T |
41490949 |
caaaccggcgaaaggctacagggacgattccggc |
41490982 |
T |
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