View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3975_low_1 (Length: 889)
Name: NF3975_low_1
Description: NF3975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3975_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 846; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 846; E-Value: 0
Query Start/End: Original strand, 16 - 873
Target Start/End: Complemental strand, 8624100 - 8623243
Alignment:
| Q |
16 |
acagaaccgaaatggaagaacaaaaaagtcgacataaataaaatttcagaggtaaaaaccttaccttcatgtgacggccagtatcattaaaagagaagtc |
115 |
Q |
| |
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| T |
8624100 |
acagaaccgaaatggaagaacaaaaaagtcgacataaataaaatttcagaggtaaaaaccttaccttcatgtgacggccagtatcattaaaagagaagtc |
8624001 |
T |
|
| Q |
116 |
tcctaaattaatgttggtataaagagaaatgattcatctaaaatgaacctgccaagaaaaggataagaaaaatgcacatcagaaaaggctaaatagaaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8624000 |
tcctaaattaatgttggtataaagagaaatgattcatctaaaatgaacctgccaagaaaaggataagaaaaatgcacatcagaaaaggctaaatagaaat |
8623901 |
T |
|
| Q |
216 |
gatcgtaccaaatttcaaagtttagttagttgaaaaccacatgtcttagtatgccagctcaaaccaatacatagtgaataagttagaaatgaaactagat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8623900 |
gatcgtaccaaatttcaaagtttagttagttgaaaaccacatgtcttagtatgccagctcaaaccaatacatagtgaataagttagaaatgaaactagag |
8623801 |
T |
|
| Q |
316 |
aaacgaaataacaagccaataaaatattgttttgtcattaaccttatcacatgctacaaaggaaccggtccggcgtcgataaacttctttcatcagtcag |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8623800 |
aaacgaaataacaagccaataaaatattgttttgtcattaaccttatcacatgctacaaaggaaccggtccggcgtcgataaacttctttcatcagtcag |
8623701 |
T |
|
| Q |
416 |
tcacagtgttgcctcacctgatatccatctttagttttgaactgaaagaacacattgtaaacaagctgaattagattaaaatatataaatgtcatagtgt |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8623700 |
tcacagtgttgcctcacctgatatccatctttagttttgaactgaaagaacacattgtaaacaagctgaattagattaaaatatataaatgtcatagtgt |
8623601 |
T |
|
| Q |
516 |
aataaaatctatgaataatcacaagtggaatttgagtgtattacctattaaagtaagcactgagtttgaaccttagcagctacagctgtctcccttgcgg |
615 |
Q |
| |
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| T |
8623600 |
aataaaatctatgaataatcacaagtggaatttgagtgtattacctattaaagtaagcactgagtttgaaccttagcagctacagctgtctcccttgcgg |
8623501 |
T |
|
| Q |
616 |
tctgccagatgaattagatccaaaagctcctcaccggttttagatttttgcatctctctaaacaatttcttattctgtaaagcatcaagatcctactccc |
715 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8623500 |
tctgccagatgaattagatccaaaagctcctcaccggttttagatttttgcatctctctaaacaatttcttattctgtaaagcatcaagatcctactccc |
8623401 |
T |
|
| Q |
716 |
tgatgcatttttccccagtgggagtctatgcatcgatagaaaacattggtcgtaaccctcacatgtgagtgtcaccatatcagacataggcctcaaaact |
815 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8623400 |
tgatgcatttttccccagtgggagtctatgcatcgatagaaaacattggtcgtaaccctcacatgtgagtgtcaccatatcagacatgggcctcaaaact |
8623301 |
T |
|
| Q |
816 |
ggcctacccatcacagcagccatatcaccattcacattcgcactactgttagaaatta |
873 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8623300 |
ggcctacccatcacagcagccatatcaccattcacattcgcactactgttagcaatta |
8623243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 77 - 437
Target Start/End: Original strand, 8635201 - 8635560
Alignment:
| Q |
77 |
taccttcatgtgacggccagtatcattaaaagagaagtctcctaaattaatgttggtataaagagaaatgattcatctaaaatgaacctgccaagaaaag |
176 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
8635201 |
taccttcatgtgtcggccagtatcattaaaagagaagtctcctaaattaatgtcggtataaagagaaacgattcatctaaaataaacctgccaagaaaag |
8635300 |
T |
|
| Q |
177 |
gataagaaaaatgcacatcagaaaaggctaaatagaaatgatcgtaccaaatttcaaagtttagttagttgaaaaccacatgtcttagtatgccagctca |
276 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
8635301 |
gataa-aaaaatgcatatcagaaaaggctaaataaaaatgatcgtaccaaatttcaaagtttagttggttgaaaaccacatgtcttagaatgccagctca |
8635399 |
T |
|
| Q |
277 |
aaccaatacatagtgaataagttagaaatgaaactagataaacgaaataacaagccaataaaatattgttttgtcattaaccttatcacatgctacaaag |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8635400 |
aaccaatacatagtgaataagttagaaatgaaactagataaactaaataacaagccaataaaatattgttttgtcattaaccttatcacatgctacaaag |
8635499 |
T |
|
| Q |
377 |
gaaccggtccggcgtcgataaacttctttcatcagtcagtcacagtgttgcctcacctgat |
437 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8635500 |
gaaccggtccggcgtcgataaacttctttcatcagtcagtcacagtgttgcctcacctgat |
8635560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 791 - 872
Target Start/End: Original strand, 8635714 - 8635795
Alignment:
| Q |
791 |
catatcagacataggcctcaaaactggcctacccatcacagcagccatatcaccattcacattcgcactactgttagaaatt |
872 |
Q |
| |
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||||||||||||| | || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
8635714 |
catatcagacataagtcttaaaactggcctacccatcgcagcagccataacaccattcacattcgcactactgttagcaatt |
8635795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 803
Target Start/End: Original strand, 8635149 - 8635194
Alignment:
| Q |
758 |
acattggtcgtaaccctcacatgtgagtgtcaccatatcagacata |
803 |
Q |
| |
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||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
8635149 |
acattggtcgtaaccctcacatgtgagggccaccatatcagacata |
8635194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 8634999 - 8635127
Alignment:
| Q |
37 |
aaaaaagtcgacataaataaaatttcagaggtaaaaaccttaccttcatgtgacggccagtatcattaaaagagaagtctcctaaattaatgttggtata |
136 |
Q |
| |
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|||||||| || ||| ||||||| | |||||||||||| |||| || ||| ||| ||||||| |||| || ||||||||||| ||| | |||| |
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| T |
8634999 |
aaaaaagtaaacgtaagtaaaattcccgaggtaaaaaccataccatcgtgtt--ggcaagtatcaagaaaaaagcagtctcctaaactaaagccagtatg |
8635096 |
T |
|
| Q |
137 |
aagagaaatgattcatctaaaatgaacctgc |
167 |
Q |
| |
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|||||||||||||| |||||||||||||||| |
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| T |
8635097 |
aagagaaatgattcgtctaaaatgaacctgc |
8635127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 64 - 689
Target Start/End: Original strand, 43913454 - 43914087
Alignment:
| Q |
64 |
gaggtaaaaaccttaccttcatgtgacggccagtatcattaaaagagaagtctcctaaattaatgttggtataaagagaaatgattcatctaaaatgaac |
163 |
Q |
| |
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|||||||||||| |||||||||||| |||| |||||| |||||| ||||||| | |||||||| || | ||||| |||||||| |||||||||||| |
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| T |
43913454 |
gaggtaaaaaccgtaccttcatgtgccggcaagtatctagaaaagaacagtctcccagattaatgtcagtgtgaagagcaatgattcgtctaaaatgaac |
43913553 |
T |
|
| Q |
164 |
ctgccaagaaaaggataagaaaaatgcacatcag-aaaaggctaaatagaaatgatcgtaccaaatttcaaagtttagttagttgaaaaccacatgtctt |
262 |
Q |
| |
|
|||||||||||||||| | ||| ||||| ||| ||||||||||||| ||||| | |||||| ||| ||||||| ||||||||||||||||||| || |
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| T |
43913554 |
ctgccaagaaaaggattacaaa--tgcacttcaacaaaaggctaaataaaaatgtccataccaatttttaaagtttgattagttgaaaaccacatgtatt |
43913651 |
T |
|
| Q |
263 |
agtatgccagctcaaaccaa--tacatagtgaataagttagaaatgaaactagataaacgaaataacaagccaataaaatattgtt-ttgtcattaacct |
359 |
Q |
| |
|
||||| |||||| ||||||| || |||||||||||||| |||||||||| ||| |||| ||||||| || |||||||||||||| ||||||||||||| |
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|
| T |
43913652 |
agtataccagctaaaaccaaaatagatagtgaataagtt-gaaatgaaaccagagaaacaaaataactagt-aataaaatattgttcttgtcattaacct |
43913749 |
T |
|
| Q |
360 |
tatcacatgctacaaaggaaccggtccggcgtcgataaacttctttcatcagtcagtcacagtgttgcctcacctgatatccatctttagttttgaactg |
459 |
Q |
| |
|
||| |||||||||||||||||||||| |||| ||| || ||||||| ||||| ||||||| | ||| |||||||| | ||| |||||||||||||||| |
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|
| T |
43913750 |
tattacatgctacaaaggaaccggtctggcgccgacaatcttcttttgtcagtaagtcacaatattgtttcacctgagaaccacctttagttttgaactg |
43913849 |
T |
|
| Q |
460 |
--aaagaacacattgtaaacaagctgaattagattaaaatata-taaatgtcatagtgtaataaaatctatgaataatcacaagt-------ggaatttg |
549 |
Q |
| |
|
||| || ||||| ||||||||| ||||||||||||| | || ||||| || ||| || ||||| || ||||||||||||| | | |||||| |
|
|
| T |
43913850 |
aaaaataatacatt-taaacaagcagaattagattaaactgtacgaaatgccagagtatagtaaaagctgtgaataatcacaattcaaaacagaaatttg |
43913948 |
T |
|
| Q |
550 |
agtgtattacctattaaagtaagcactgagtttgaaccttagcagctacagctgtctcccttgcggtctgccagatgaattagatccaaaagctcctcac |
649 |
Q |
| |
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||||||| ||||| |||||||||| ||| |||||||||||||||||||||| | ||||||||| ||| | ||||||| |||||||||||||| || |
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| T |
43913949 |
agtgtatagcctatcaaagtaagcagtgaatttgaaccttagcagctacagcagcctcccttgcagtc-ggtttctgaattaaatccaaaagctccttac |
43914047 |
T |
|
| Q |
650 |
cggttttagatttttgcatctctctaaacaatttcttatt |
689 |
Q |
| |
|
| ||||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
43914048 |
cagttttggatttttgcatctccctaaacgatttcttatt |
43914087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 709 - 751
Target Start/End: Original strand, 43914168 - 43914210
Alignment:
| Q |
709 |
tactccctgatgcatttttccccagtgggagtctatgcatcga |
751 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
43914168 |
tactccctgatgcatttggccccattgggagtctatgcatcga |
43914210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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