View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3975_low_3 (Length: 494)

Name: NF3975_low_3
Description: NF3975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3975_low_3
NF3975_low_3
[»] chr6 (4 HSPs)
chr6 (19-293)||(414875-415149)
chr6 (351-479)||(414664-414792)
chr6 (179-260)||(404717-404798)
chr6 (196-281)||(400574-400659)
[»] chr7 (2 HSPs)
chr7 (203-293)||(12217186-12217276)
chr7 (76-128)||(4017809-4017861)
[»] chr3 (1 HSPs)
chr3 (76-133)||(15864820-15864877)
[»] chr8 (1 HSPs)
chr8 (76-120)||(34863481-34863525)
[»] chr5 (1 HSPs)
chr5 (64-120)||(2703468-2703524)
[»] chr2 (1 HSPs)
chr2 (76-139)||(37986759-37986823)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 415149 - 414875
Alignment:
Q  19 accaaccccgtttgatcgaaagtgtgtcccgagtctaacacatgtcactcacatatttgattacattcaattatatcgttttttcaaatagttatccgtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  415149 accaaccccgtttgatcgaaagtgtgtcccgagtctaacacatgtcactcacatatttgattacattcaattatatcgttttttcaaatagttatccgtg 415050  T
Q  119 tcgacgtgtcatgtcgtgtccaaagttcttacatatgtcaagtgattcgtagattacaacaatggtttagttttttaataacatacctgtatttaatcat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  415049 tcgacgtgtcatgtcgtgtccaaagttcttacatatgtcaagtgattcgtagattacaacaatggtttagttttttaataacatacctgtatttaatcat 414950  T
Q  219 ttcaggaaaaatcaagacatcaccttcggagaatccatcctcctcgcgcgcctcacaaactgtaatcatcgtcta 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  414949 ttcaggaaaaatcaagacatcaccttcggagaatccatcctcctcgcgcgcctcacaaactgtaatcatcgtcta 414875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 351 - 479
Target Start/End: Complemental strand, 414792 - 414664
Alignment:
Q  351 tatgaagcaccaatagagacaagtcactgacactaacacgttcacacaaaccggtaataatttnnnnnnntgaatcacacactaacacatgtcagacact 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||     
T  414792 tatgaagcaccaatagagacaagtcactgacactaacacgttcacacaaaccggtaataatttaaaaaaatgaatcacacactaacacatgtcagacacc 414693  T
Q  451 agacacaacttcgatcagaggtgttagtt 479  Q
    |||||||||||||||||||||||||||||    
T  414692 agacacaacttcgatcagaggtgttagtt 414664  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 404798 - 404717
Alignment:
Q  179 aatggtttagttttttaataacatacctgtatttaatcatttcaggaaaaatcaagacatcaccttcggagaatccatcctc 260  Q
    ||||||||| |||| ||||||||||| ||||||| |||||||| || ||||||||||| || || |||||||| ||||||||    
T  404798 aatggtttacttttgtaataacatacttgtatttgatcatttctgggaaaatcaagacgtctccgtcggagaagccatcctc 404717  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 400574 - 400659
Alignment:
Q  196 ataacatacctgtatttaatcatttcaggaaaaatcaagacatcaccttcggagaatccatcctcctcgcgcgcctcacaaactgt 281  Q
    |||| |||| ||||||| |||||||| || ||||||||||| || || |||||||| |||||||| ||   || ||||||||||||    
T  400574 ataatatacttgtatttgatcatttctgggaaaatcaagacgtcgccgtcggagaagccatcctcttcaatcgtctcacaaactgt 400659  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 12217186 - 12217276
Alignment:
Q  203 acctgtatttaatcatttcaggaaaaatcaagacatcaccttcggagaatccatcctcctcgcgcgcctcacaaactgtaatcatcgtcta 293  Q
    |||||||||||| |||||| || |||||||| || ||||| || ||||||||||| ||||| | ||| ||||| || |||||  |||||||    
T  12217186 acctgtatttaaccatttccgggaaaatcaaaacgtcaccgtcagagaatccatcttcctcactcgcttcacacacagtaattttcgtcta 12217276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 4017809 - 4017861
Alignment:
Q  76 tgattacattcaattatatcgttttttcaaatagttatccgtgtcgacgtgtc 128  Q
    |||||||| | |||||||||||||| ||||||  |||||||||||| ||||||    
T  4017809 tgattacactaaattatatcgttttctcaaattattatccgtgtcggcgtgtc 4017861  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 15864877 - 15864820
Alignment:
Q  76 tgattacattcaattatatcgttttttcaaatagttatccgtgtcgacgtgtcatgtc 133  Q
    |||||||| | ||||||||| |||||||||||  |||||||||||| |||||| ||||    
T  15864877 tgattacactaaattatatcattttttcaaattattatccgtgtcggcgtgtcgtgtc 15864820  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 34863525 - 34863481
Alignment:
Q  76 tgattacattcaattatatcgttttttcaaatagttatccgtgtc 120  Q
    ||||||||||||||||  || |||||||||||| |||||||||||    
T  34863525 tgattacattcaattaagtcattttttcaaataattatccgtgtc 34863481  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 2703468 - 2703524
Alignment:
Q  64 cactcacatatttgattacattcaattatatcgttttttcaaatagttatccgtgtc 120  Q
    ||||||||||| ||||||||||||||| | || |||||||||||  ||||| |||||    
T  2703468 cactcacatatatgattacattcaattgtgtcattttttcaaatgcttatcggtgtc 2703524  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 37986823 - 37986759
Alignment:
Q  76 tgattacattcaattatatcgttttttcaaatagttatccgtgtcgacgtgtca-tgtcgtgtcc 139  Q
    |||||||| |||| |||||| |||||||||||  ||||| |||||| ||||||| ||||||||||    
T  37986823 tgattacactcaaatatatcattttttcaaattattatctgtgtcggcgtgtcagtgtcgtgtcc 37986759  T

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