View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3975_low_7 (Length: 249)

Name: NF3975_low_7
Description: NF3975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3975_low_7
NF3975_low_7
[»] chr5 (3 HSPs)
chr5 (1-239)||(28136246-28136485)
chr5 (175-221)||(12478324-12478370)
chr5 (162-195)||(22817195-22817228)
[»] chr4 (1 HSPs)
chr4 (163-221)||(39439259-39439317)
[»] chr1 (2 HSPs)
chr1 (163-210)||(44363999-44364046)
chr1 (175-205)||(4785044-4785074)
[»] chr8 (3 HSPs)
chr8 (163-217)||(31586217-31586271)
chr8 (163-204)||(5041196-5041237)
chr8 (176-216)||(27219851-27219891)
[»] chr3 (3 HSPs)
chr3 (168-210)||(13635634-13635676)
chr3 (176-222)||(21110706-21110752)
chr3 (163-191)||(14774140-14774168)
[»] chr6 (1 HSPs)
chr6 (176-221)||(414669-414714)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28136485 - 28136246
Alignment:
Q  1 ttagtttaactttcagtttctgtcaaatcatattgcaatagtggacaagtttacttgacagcgaaaaa-gaatgattttccaaatgttaaatatgtgcat 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28136485 ttagtttaactttcagtttctgtcaaatcatattgcaatagtggacaagtttacttgacagcgaaaaaagaatgattttccaaatgttaaatatgtgcat 28136386  T
Q  100 aattgtacttagatggtttgcattttataggctactgctattaataaaaacgtaactgacaagctctatagcattgacacttctgatcgaagacgtgtct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28136385 aattgtacttagatggtttgcattttataggctactgctattaataaaaacgtaactgacaagctctatagcactgacacttctgatcgaagacgtgtct 28136286  T
Q  200 ggtgtctgacatgtgtcagtgtccgtgtcgtgtttctctg 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28136285 ggtgtctgacatgtgtcagtgtccgtgtcgtgtttctctg 28136246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 12478370 - 12478324
Alignment:
Q  175 gacacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgt 221  Q
    |||| ||||||| |||| ||||||||||||||||||||||| |||||    
T  12478370 gacatttctgatggaaggcgtgtctggtgtctgacatgtgtaagtgt 12478324  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 22817228 - 22817195
Alignment:
Q  162 gctctatagcattgacacttctgatcgaagacgt 195  Q
    ||||||||||| ||||||||||||||||||||||    
T  22817228 gctctatagcactgacacttctgatcgaagacgt 22817195  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 39439317 - 39439259
Alignment:
Q  163 ctctatagcattgacacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgt 221  Q
    |||||||||| | |||||||||||||||||||| |||||||||||||| ||||| ||||    
T  39439317 ctctatagcacttacacttctgatcgaagacgtctctggtgtctgacacgtgtctgtgt 39439259  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 44364046 - 44363999
Alignment:
Q  163 ctctatagcattgacacttctgatcgaagacgtgtctggtgtctgaca 210  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||| ||||    
T  44364046 ctctatagcattgacacttctaatcaaagccgtgtctggtgtccgaca 44363999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 4785074 - 4785044
Alignment:
Q  175 gacacttctgatcgaagacgtgtctggtgtc 205  Q
    |||||||||||||||||||||||||||||||    
T  4785074 gacacttctgatcgaagacgtgtctggtgtc 4785044  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 31586217 - 31586271
Alignment:
Q  163 ctctatagcattgacacttctgatcgaagacgtgtctggtgtctgacatgtgtca 217  Q
    |||||||||| |||||||||||||| ||| | |||||||||||  ||||||||||    
T  31586217 ctctatagcactgacacttctgatcaaagccatgtctggtgtccaacatgtgtca 31586271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 5041196 - 5041237
Alignment:
Q  163 ctctatagcattgacacttctgatcgaagacgtgtctggtgt 204  Q
    |||| ||||| |||||||| ||||||||||||||||||||||    
T  5041196 ctctgtagcactgacacttttgatcgaagacgtgtctggtgt 5041237  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 27219891 - 27219851
Alignment:
Q  176 acacttctgatcgaagacgtgtctggtgtctgacatgtgtc 216  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  27219891 acacttctgatcgaaggtgtgtctggtgtctaacatgtgtc 27219851  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 13635676 - 13635634
Alignment:
Q  168 tagcattgacacttctgatcgaagacgtgtctggtgtctgaca 210  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||    
T  13635676 tagcactgacacttctgatagaaggcgtgtctggtgtctgaca 13635634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 21110706 - 21110752
Alignment:
Q  176 acacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgtc 222  Q
    |||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  21110706 acacttctgatcgaaagcgtgtttggtgtctgacatgtgtcaatgtc 21110752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 14774168 - 14774140
Alignment:
Q  163 ctctatagcattgacacttctgatcgaag 191  Q
    |||||||||||||||||||||||||||||    
T  14774168 ctctatagcattgacacttctgatcgaag 14774140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 414669 - 414714
Alignment:
Q  176 acacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgt 221  Q
    |||| |||||||||||  |||||||||||||||||||||| |||||    
T  414669 acacctctgatcgaagttgtgtctggtgtctgacatgtgttagtgt 414714  T

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