View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3977_low_1 (Length: 414)

Name: NF3977_low_1
Description: NF3977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3977_low_1
NF3977_low_1
[»] scaffold0284 (2 HSPs)
scaffold0284 (86-406)||(2292-2612)
scaffold0284 (4-46)||(2708-2750)
[»] scaffold0211 (2 HSPs)
scaffold0211 (91-406)||(19909-20224)
scaffold0211 (4-87)||(20301-20383)
[»] scaffold0114 (2 HSPs)
scaffold0114 (86-402)||(34952-35268)
scaffold0114 (4-57)||(34808-34860)
[»] chr8 (16 HSPs)
chr8 (86-404)||(36754494-36754812)
chr8 (201-406)||(41528465-41528669)
chr8 (122-287)||(7680907-7681073)
chr8 (99-278)||(1249150-1249330)
chr8 (89-278)||(33590138-33590326)
chr8 (121-288)||(41303046-41303215)
chr8 (171-244)||(21602122-21602195)
chr8 (169-252)||(6393861-6393944)
chr8 (4-87)||(41528704-41528786)
chr8 (159-234)||(3662413-3662488)
chr8 (154-288)||(21600444-21600579)
chr8 (164-217)||(33508621-33508674)
chr8 (349-406)||(43216918-43216975)
chr8 (4-79)||(36754888-36754962)
chr8 (153-199)||(42659935-42659981)
chr8 (173-285)||(42844877-42844990)
[»] chr5 (21 HSPs)
chr5 (86-406)||(9023279-9023599)
chr5 (97-288)||(27769814-27770004)
chr5 (4-87)||(9023124-9023206)
chr5 (97-319)||(28903637-28903860)
chr5 (97-319)||(28940032-28940255)
chr5 (164-289)||(8206232-8206358)
chr5 (90-287)||(11497891-11498089)
chr5 (90-287)||(11505247-11505445)
chr5 (90-287)||(11512641-11512839)
chr5 (90-287)||(11520017-11520215)
chr5 (90-287)||(11527425-11527623)
chr5 (90-287)||(11534831-11535029)
chr5 (159-212)||(26675123-26675175)
chr5 (159-212)||(26946731-26946783)
chr5 (166-285)||(917099-917219)
chr5 (159-206)||(14460086-14460133)
chr5 (221-274)||(14461768-14461822)
chr5 (167-288)||(23159071-23159193)
chr5 (159-212)||(27001235-27001288)
chr5 (165-217)||(296413-296465)
chr5 (159-235)||(7313980-7314056)
[»] chr4 (37 HSPs)
chr4 (86-406)||(6552448-6552768)
chr4 (86-406)||(312622-312952)
chr4 (135-402)||(6552897-6553164)
chr4 (97-278)||(38932689-38932870)
chr4 (97-319)||(48827963-48828185)
chr4 (86-280)||(26499322-26499519)
chr4 (89-237)||(47097347-47097495)
chr4 (87-288)||(51150882-51151082)
chr4 (97-288)||(45615656-45615849)
chr4 (91-287)||(56095063-56095259)
chr4 (97-288)||(13834369-13834561)
chr4 (145-288)||(38080856-38081000)
chr4 (97-199)||(7616903-7617005)
chr4 (4-87)||(312471-312552)
chr4 (159-288)||(8170895-8171025)
chr4 (159-251)||(11839848-11839940)
chr4 (122-288)||(32934038-32934204)
chr4 (5-87)||(6552296-6552376)
chr4 (167-244)||(8755906-8755983)
chr4 (164-288)||(17381489-17381614)
chr4 (159-212)||(48973337-48973390)
chr4 (169-280)||(46804961-46805072)
chr4 (224-278)||(13834508-13834563)
chr4 (223-288)||(46804797-46804863)
chr4 (229-321)||(7616755-7616848)
chr4 (159-278)||(39331100-39331219)
chr4 (167-206)||(4161825-4161864)
chr4 (164-274)||(7912534-7912645)
chr4 (153-212)||(31903370-31903429)
chr4 (164-199)||(36409659-36409694)
chr4 (164-199)||(36423825-36423860)
chr4 (159-241)||(24806664-24806746)
chr4 (164-217)||(9297465-9297518)
chr4 (224-280)||(45615652-45615709)
chr4 (174-280)||(1758349-1758454)
chr4 (326-378)||(6561023-6561075)
chr4 (229-280)||(46805803-46805855)
[»] chr2 (14 HSPs)
chr2 (86-406)||(31967293-31967613)
chr2 (89-319)||(41746338-41746568)
chr2 (164-288)||(40124306-40124431)
chr2 (97-252)||(7165643-7165798)
chr2 (143-324)||(9470617-9470797)
chr2 (97-236)||(17742516-17742654)
chr2 (221-319)||(23077824-23077922)
chr2 (97-150)||(9471792-9471845)
chr2 (167-252)||(33260990-33261075)
chr2 (164-236)||(15301526-15301598)
chr2 (328-367)||(36727631-36727670)
chr2 (159-199)||(12676513-12676553)
chr2 (164-212)||(15816894-15816942)
chr2 (341-381)||(36720129-36720169)
[»] chr1 (18 HSPs)
chr1 (86-406)||(49880091-49880412)
chr1 (112-406)||(45919675-45919969)
chr1 (89-280)||(9890571-9890758)
chr1 (97-327)||(40872549-40872776)
chr1 (89-280)||(27463771-27463963)
chr1 (97-319)||(16658084-16658307)
chr1 (145-318)||(47921876-47922047)
chr1 (86-199)||(31738321-31738433)
chr1 (97-250)||(8069009-8069161)
chr1 (97-217)||(52361954-52362074)
chr1 (159-217)||(6541118-6541176)
chr1 (166-206)||(33747858-33747898)
chr1 (159-199)||(34826996-34827036)
chr1 (335-406)||(16853665-16853736)
chr1 (326-402)||(31088751-31088829)
chr1 (223-288)||(51849552-51849618)
chr1 (30-87)||(49879921-49879977)
chr1 (164-212)||(38267350-38267398)
[»] chr3 (20 HSPs)
chr3 (86-406)||(50239800-50240103)
chr3 (97-325)||(7672391-7672615)
chr3 (91-312)||(43838486-43838718)
chr3 (164-288)||(30006169-30006293)
chr3 (4-87)||(50239649-50239731)
chr3 (170-253)||(14984484-14984567)
chr3 (159-212)||(30843658-30843711)
chr3 (172-210)||(3941666-3941704)
chr3 (159-280)||(23195656-23195778)
chr3 (164-212)||(26499839-26499887)
chr3 (223-288)||(22235229-22235295)
chr3 (159-237)||(34979110-34979188)
chr3 (171-212)||(12832219-12832260)
chr3 (349-406)||(14249233-14249290)
chr3 (164-253)||(21568379-21568468)
chr3 (158-207)||(37852904-37852953)
chr3 (122-199)||(41897973-41898049)
chr3 (164-212)||(14194862-14194910)
chr3 (164-212)||(39336722-39336770)
chr3 (161-217)||(53705888-53705944)
[»] chr6 (16 HSPs)
chr6 (89-317)||(21237203-21237431)
chr6 (89-327)||(6524890-6525122)
chr6 (99-319)||(26293425-26293648)
chr6 (164-279)||(9307403-9307518)
chr6 (229-280)||(14549249-14549300)
chr6 (124-280)||(17848727-17848884)
chr6 (181-288)||(20565728-20565836)
chr6 (159-233)||(16431591-16431665)
chr6 (164-280)||(10067660-10067777)
chr6 (167-238)||(21021035-21021106)
chr6 (159-202)||(29927657-29927700)
chr6 (154-252)||(25085014-25085112)
chr6 (240-288)||(12291646-12291695)
chr6 (173-262)||(23887562-23887649)
chr6 (159-212)||(31142035-31142088)
chr6 (173-233)||(18129947-18130007)
[»] scaffold0252 (1 HSPs)
scaffold0252 (91-319)||(17102-17327)
[»] chr7 (17 HSPs)
chr7 (89-324)||(25689001-25689234)
chr7 (124-237)||(5197982-5198095)
chr7 (97-280)||(8929505-8929689)
chr7 (164-262)||(32996306-32996404)
chr7 (107-280)||(18942787-18942962)
chr7 (164-237)||(5362338-5362411)
chr7 (164-288)||(34703671-34703795)
chr7 (165-212)||(1344462-1344509)
chr7 (164-215)||(3116911-3116962)
chr7 (110-212)||(30839838-30839940)
chr7 (158-280)||(40077598-40077720)
chr7 (97-288)||(38838508-38838698)
chr7 (159-262)||(40355004-40355107)
chr7 (328-382)||(2929478-2929532)
chr7 (154-236)||(8062786-8062868)
chr7 (164-217)||(39608429-39608482)
chr7 (255-319)||(30839724-30839788)
[»] scaffold0216 (1 HSPs)
scaffold0216 (326-378)||(29157-29209)
[»] scaffold0045 (1 HSPs)
scaffold0045 (167-238)||(20628-20699)
[»] scaffold0191 (1 HSPs)
scaffold0191 (349-406)||(11645-11702)
[»] scaffold0074 (1 HSPs)
scaffold0074 (328-378)||(32751-32801)


Alignment Details
Target: scaffold0284 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 86 - 406
Target Start/End: Complemental strand, 2612 - 2292
Alignment:
Q  86 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 185  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  2612 taatctctcagtgtattaaaattctaaaataatccatgattttgtactttgttagtcataataatccctgaagtgacaataaataagtatattgaaggac 2513  T
Q  186 taatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggac 285  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  2512 taatatgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaagtgtacaatcggagacaatttaaaattttaatagattgatggac 2413  T
Q  286 tatcttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacac 385  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2412 tattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacac 2313  T
Q  386 taagattttggatgatgatgt 406  Q
    |||||||||||||||||||||    
T  2312 taagattttggatgatgatgt 2292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 2750 - 2708
Alignment:
Q  4 agtaaaaatttcacttagtatgaaatcaggggcggatctatgt 46  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  2750 agtaaaaatttcactttgtatgaaatcaggggcggatctatgt 2708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 91 - 406
Target Start/End: Complemental strand, 20224 - 19909
Alignment:
Q  91 tctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaata 190  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20224 tctcagtgtattaaaattctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacaataaataagtatattgaaggactaata 20125  T
Q  191 tgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactatct 290  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20124 tgacaatatcaatgaagtatttgaatgttagagactattttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactatct 20025  T
Q  291 tagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaaga 390  Q
    || ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20024 taacctcacatgtatccaatgtctagatttgtccctgaatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaaga 19925  T
Q  391 ttttggatgatgatgt 406  Q
    ||||||||||||||||    
T  19924 ttttggatgatgatgt 19909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 20383 - 20301
Alignment:
Q  4 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 87  Q
    ||||||||||||||||  |||||||||||||||||||||||||| ||||||||| | ||||  |||||||||||||||||||||    
T  20383 agtaaaaatttcactttatatgaaatcaggggcggatctatgtt-agggctatgtggggctcaagccccacatgcccttcccta 20301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 86 - 402
Target Start/End: Original strand, 34952 - 35268
Alignment:
Q  86 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 185  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  34952 taatctctcagtgtattaaaattctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgataataaataagtatattgaaggac 35051  T
Q  186 taatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggac 285  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35052 taatatgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaagtgtacaaccagagacaatttaaaattttaatacattgatggac 35151  T
Q  286 tatcttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacac 385  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35152 tattttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaaacatataagttagatgatcgatatacctaatacac 35251  T
Q  386 taagattttggatgatg 402  Q
    |||||||||||||||||    
T  35252 taagattttggatgatg 35268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 34808 - 34860
Alignment:
Q  4 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatg 57  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||    
T  34808 agtaaaagtttcactttgtatgaaatcaggggcggatctatgtt-agggctatg 34860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 86 - 404
Target Start/End: Complemental strand, 36754812 - 36754494
Alignment:
Q  86 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 185  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  36754812 taatctctcagtgtattaaaattctaaaataattcatgattttgtactttgttagtcataatagtccatgaagtgacaataaataagtatattgaaggac 36754713  T
Q  186 taatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggac 285  Q
    |||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  36754712 taatatgacaatatcaatgaagtatttgaatgttagggaccattttgactaatgaactatacaatcagagacaatttaaaattttaatacattgatggac 36754613  T
Q  286 tatcttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacac 385  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36754612 tatcttagcctcacatgtatccaatgtctagatctatccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacac 36754513  T
Q  386 taagattttggatgatgat 404  Q
    |||||||||||||||||||    
T  36754512 taagattttggatgatgat 36754494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 201 - 406
Target Start/End: Complemental strand, 41528669 - 41528465
Alignment:
Q  201 aatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactatcttagcctcaca 300  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  41528669 aatgaagtatttgaatgttagggactattttgactaat-aagtgtacaatcagagacaatttaaaattttaatacattgatgtactattttagcctcaca 41528571  T
Q  301 tgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatga 400  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528570 tgtatccaatgtctagatatgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatga 41528471  T
Q  401 tgatgt 406  Q
    ||||||    
T  41528470 tgatgt 41528465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 122 - 287
Target Start/End: Original strand, 7680907 - 7681073
Alignment:
Q  122 tgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatag 221  Q
    |||||||||||||||||| |||||||||||| |||| |||| |||| |||| ||||||||  ||||| |||||||||| || ||| ||||| |||| |||    
T  7680907 tgattttgtactttgttactcataatagtccttgaaatgacaataagtaaggatattgaaatactaagatgacaatattaacgaattattttaatgttag 7681006  T
Q  222 ggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggacta 287  Q
    |||| | ||||||||| ||| || ||||||| | || | ||||||||||| ||||||||| ||||||    
T  7681007 ggacgattttgactaacgaaatgcacaatcaaatactattttaaaattttgatacattgagggacta 7681073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 99 - 278
Target Start/End: Original strand, 1249150 - 1249330
Alignment:
Q  99 tattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaa-gtgacgataaataagtatattgaaggactaatatgacaat 197  Q
    ||||||| |||||||||| | ||||||||||  |||||||||||| |||||||| |||| ||||| |||| ||| |||||||||| ||| |||||||| |    
T  1249150 tattaaaattctaaaatagttcatgattttgctctttgttagtcaaaatagtccttgaaagtgacaataagtaaatatattgaagtactgatatgacagt 1249249  T
Q  198 atcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacatt 278  Q
    || ||  || ||||| |||| ||  || || ||||||||| ||| ||||||||||  |||||||| |||||||||||||||    
T  1249250 attaacaaaatattttaatgttatagattattttgactaacgaaatgtacaatcaatgacaatttgaaattttaatacatt 1249330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 89 - 278
Target Start/End: Original strand, 33590138 - 33590326
Alignment:
Q  89 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 188  Q
    ||||||| ||||||||| || ||||||| | |||||||||| |||||||||||||  ||||||  | ||||||| |||| ||| |||||||||| |   |    
T  33590138 tctctcaatgtattaaaattgtaaaatagttcatgattttgcactttgttagtcaatatagtcttttaagtgacaataattaattatattgaagaatcga 33590237  T
Q  189 tatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacatt 278  Q
    ||||||||||| || ||||||||| |||| |||||| || |||||||||  || |||| |||| | ||||||||| |||||| |||||||    
T  33590238 tatgacaatattaacgaagtattttaatgttagggattattttgactaacaaaatgtataatctg-gacaatttataattttgatacatt 33590326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 288
Target Start/End: Original strand, 41303046 - 41303215
Alignment:
Q  121 atgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg--a 218  Q
    ||||||||| ||||||||||||| ||||| ||||| |||||| |||| |||||||||| || ||||||||||||||||| ||  || ||||| ||||  |    
T  41303046 atgattttgcactttgttagtcaaaatag-ccctggagtgacaataattaagtatattaaaagactaatatgacaatattaacaaattattttaatgtta 41303144  T
Q  219 tagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggactat 288  Q
    | ||||||| ||||||||   ||||| | |||||  ||| | ||||||||||| ||||||||| |||||||    
T  41303145 tcgggactattttgactagcaaagtgcataatcaatgactattttaaaattttgatacattgagggactat 41303215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 21602122 - 21602195
Alignment:
Q  171 agtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtg 244  Q
    ||||||||||||||||||||||||||||| || ||| ||||| ||||  |||||||| ||||| ||||||||||    
T  21602122 agtatattgaaggactaatatgacaatattaacgaattattttaatgtcagggactattttgattaatgaagtg 21602195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 6393944 - 6393861
Alignment:
Q  169 taagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatca 252  Q
    |||||||||||||| |||||||||| ||||| || ||| ||||| |||| |||| |||| |||||||||| ||||| |||||||    
T  6393944 taagtatattgaagaactaatatgataatattaaagaactattttaatgttaggaactattttgactaataaagtgcacaatca 6393861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 41528786 - 41528704
Alignment:
Q  4 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 87  Q
    |||||||||||||||| |||||||||||  |||||||||||||| ||| ||||| | ||||  ||||| |||||||||||||||    
T  41528786 agtaaaaatttcactttgtatgaaatcaatggcggatctatgtt-aggactatgtggggctaaagccctacatgcccttcccta 41528704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 3662488 - 3662413
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgac 234  Q
    |||| |||| |||||||||| ||| |||||||||||||||| ||  || ||||| |||| ||||||||||||||||    
T  3662488 tgacaataagtaagtatattaaagaactaatatgacaatattaacaaattattttaatgctagggactaatttgac 3662413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 288
Target Start/End: Complemental strand, 21600579 - 21600444
Alignment:
Q  154 tgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcag 253  Q
    |||| |||| |||| ||||||||||||||||| ||||||||||||| |||||| ||||| ||    || ||||||||| | ||| ||| || |||||||     
T  21600579 tgaaatgacaataagtaagtatattgaaggacaaatatgacaatattaatgaaatattttaacatcagtgactaattttattaacgaaatgcacaatcaa 21600480  T
Q  254 agac-aatttaaaattttaatacattgatggactat 288  Q
     ||| | ||||||||||| ||||||| | |||||||    
T  21600479 tgactattttaaaattttgatacattaagggactat 21600444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 33508621 - 33508674
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 217  Q
    |||| |||||||||||||||||||||| || ||||| |||||||||||| ||||    
T  33508621 ataagtaagtatattgaaggactaatacgataatattaatgaagtattttaatg 33508674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 43216975 - 43216918
Alignment:
Q  349 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgt 406  Q
    ||||||||||||||||||||| |||||| |||| |  ||||||||||| |||||||||    
T  43216975 aaacatataagtgagatgatcaatatacataatgctttaagattttgggtgatgatgt 43216918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 36754962 - 36754888
Alignment:
Q  4 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcc 79  Q
    ||||||||||| |||| ||||||||||| || |||||||||||| ||| ||||| | ||||  |||||||||||||    
T  36754962 agtaaaaattttactttgtatgaaatcaaggacggatctatgtt-aggactatgtggggctaaagccccacatgcc 36754888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 42659981 - 42659935
Alignment:
Q  153 ctgaagtgacgataaataagtatattgaaggactaatatgacaatat 199  Q
    |||| ||||| |||| ||||||||||||| |||||||||||||||||    
T  42659981 ctgatgtgacaataagtaagtatattgaatgactaatatgacaatat 42659935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 42844990 - 42844877
Alignment:
Q  173 tatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatt-taaaatttta 271  Q
    ||||||||| || | |||||||||||| ||||||  |||| |||   ||| |||| |||||||||| ||||||||||||| || | |||  ||||||||     
T  42844990 tatattgaatgattgatatgacaatattaatgaaacattttaatatcaggaactattttgactaattaagtgtacaatcaaagcctattcgaaaattttg 42844891  T
Q  272 atacattgatggac 285  Q
    ||||||||| ||||    
T  42844890 atacattgaaggac 42844877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 86 - 406
Target Start/End: Original strand, 9023279 - 9023599
Alignment:
Q  86 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 185  Q
    ||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  9023279 taatctcacagtgtattacacttctaaaataatccatgattttgtactttgttagttataatagtccctgaagtgacaataaataagtatattgaaggac 9023378  T
Q  186 taatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggac 285  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  9023379 taatatgacaatatcaatgaagtatttgaatgttagggactattttgactaataaagtgtacaatcagagacaatttaaaattttaatacattgatagac 9023478  T
Q  286 tatcttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacac 385  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9023479 tatcttagcctcacatgtatccaatgtctatatttgtccctggatgcaaaagtaaatgttaagaaacatacaagtgagatgatcgatatacctaatacac 9023578  T
Q  386 taagattttggatgatgatgt 406  Q
    |||||||||||||||||||||    
T  9023579 taagattttggatgatgatgt 9023599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 97 - 288
Target Start/End: Complemental strand, 27770004 - 27769814
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    ||||||||| |||||||||| |||||||||||||||||| |||||||||||||||  ||||||||  |||| ||||||||||||||   |||||||||||    
T  27770004 tgtattaaaattctaaaatagtccatgattttgtacttttttagtcataatagtctttgaagtgaaaataagtaagtatattgaagagttaatatgacaa 27769905  T
Q  197 tatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactat 288  Q
    ||| ||| || ||||| |||| ||| |||||  |||||||| |||||||| ||||| | |||||||||| |||| ||||||||| |||||||    
T  27769904 tattaataaaatattttaatgttagtgactatcttgactaacgaagtgta-aatcaaaaacaatttaaattttttatacattgagggactat 27769814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 9023124 - 9023206
Alignment:
Q  4 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 87  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||    
T  9023124 agtaaaaatttcactttgtatgaaatcaggggcggatctatgtt-agggctatgtggggctttagccccacatgcccttcccta 9023206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 97 - 319
Target Start/End: Complemental strand, 28903860 - 28903637
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatat-tgaaggactaatatgaca 195  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||  |||| |||||||||   ||||  | ||||||      
T  28903860 tgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagttcatgaagtgataataagtaagtatatcaaaagggttgatatgaat 28903761  T
Q  196 atatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactatcttagcc 295  Q
    |||| |||||||||||| |||| |||  |||| |||||| |  ||| |||||||| |||||||||||||  |||| ||| ||| | ||||||| ||| ||    
T  28903760 atattaatgaagtattttaatgttagaaactattttgaccatcgaaatgtacaattagagacaatttaatttttttatatatttagggactattttaacc 28903661  T
Q  296 tcacatgtatccaatgtctagatc 319  Q
     ||||| |||| ||| ||||||||    
T  28903660 ccacatatatcaaatatctagatc 28903637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 97 - 319
Target Start/End: Complemental strand, 28940255 - 28940032
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatat-tgaaggactaatatgaca 195  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||  |||| |||||||||   ||||  | ||||||      
T  28940255 tgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagttcatgaagtgataataagtaagtatatcaaaagggttgatatgaat 28940156  T
Q  196 atatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactatcttagcc 295  Q
    |||| |||||||||||| |||| |||  |||| |||||| |  ||| |||||||| |||||||||||||  |||| ||| ||| | ||||||| ||| ||    
T  28940155 atattaatgaagtattttaatgttagaaactattttgaccatcgaaatgtacaattagagacaatttaatttttttatatatttagggactattttaacc 28940056  T
Q  296 tcacatgtatccaatgtctagatc 319  Q
     ||||| |||| ||| ||||||||    
T  28940055 ccacatatatcaaatatctagatc 28940032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 8206232 - 8206358
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatt-t 262  Q
    |||| |||||||||||||||| |||||||||||||| |||||| |||||   ||  | |||||| |||||||||||||||| ||| |||| ||| ||| |    
T  8206232 ataagtaagtatattgaaggattaatatgacaatattaatgaattattttgttgtcaaggactattttgactaatgaagtgcacattcagggactattat 8206331  T
Q  263 aaaattttaatacattgatggactatc 289  Q
    |||||||  ||||||| | ||||||||    
T  8206332 aaaatttcgatacattaaaggactatc 8206358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 11497891 - 11498089
Alignment:
Q  90 ctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaat 189  Q
    |||||| ||||||||| |  | ||||||||  | |||||| || |||||||||  || |  |||||||||||| |||| |||||||||| || || ||||    
T  11497891 ctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtcgaaacaccccctgaagtgacaataagtaagtatattaaaagattaat 11497990  T
Q  190 atgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggacta 287  Q
    |||||||||| ||  || ||||| |||| |||||||||  |||||||   ||||| | ||||| | || | ||||||||||| ||||||||| ||||||    
T  11497991 atgacaatattaacaaattattttaatgttagggactatgttgactagaaaagtgaataatcaaatactattttaaaattttgatacattgagggacta 11498089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 11505247 - 11505445
Alignment:
Q  90 ctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaat 189  Q
    |||||| ||||||||| |  | ||||||||  | |||||| || |||||||||  ||||  |||||||||||| |||| |||||||||| || || ||||    
T  11505247 ctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaat 11505346  T
Q  190 atgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggacta 287  Q
    | |||||||| ||  || ||||| |||| |||||||||  |||||||   ||||| | ||||| | || | ||||||||||| ||||||||| ||||||    
T  11505347 acgacaatattaacaaattattttaatgttagggactatgttgactagaaaagtgaataatcaaatactattttaaaattttgatacattgagggacta 11505445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 11512641 - 11512839
Alignment:
Q  90 ctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaat 189  Q
    |||||| ||||||||| |  | ||||||||  | |||||| || |||||||||  ||||  |||||||||||| |||| |||||||||| || || ||||    
T  11512641 ctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaat 11512740  T
Q  190 atgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggacta 287  Q
    | |||||||| ||  || ||||| |||| |||||||||  |||||||   ||||| | ||||| | || | ||||||||||| ||||||||| ||||||    
T  11512741 acgacaatattaacaaattattttaatgttagggactatgttgactagaaaagtgaataatcaaatactattttaaaattttgatacattgagggacta 11512839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 11520017 - 11520215
Alignment:
Q  90 ctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaat 189  Q
    |||||| ||||||||| |  | ||||||||  | |||||| || |||||||||  ||||  |||||||||||| |||| |||||||||| || || ||||    
T  11520017 ctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaat 11520116  T
Q  190 atgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggacta 287  Q
    | |||||||| ||  || ||||| |||| |||||||||  |||||||   ||||| | ||||| | || | ||||||||||| ||||||||| ||||||    
T  11520117 acgacaatattaacaaattattttaatgttagggactatgttgactagaaaagtgaataatcaaatactattttaaaattttgatacattgagggacta 11520215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 11527425 - 11527623
Alignment:
Q  90 ctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaat 189  Q
    |||||| ||||||||| |  | ||||||||  | |||||| || |||||||||  ||||  |||||||||||| |||| |||||||||| || || ||||    
T  11527425 ctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaat 11527524  T
Q  190 atgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggacta 287  Q
    | |||||||| ||  || ||||| |||| |||||||||  |||||||   ||||| | ||||| | || | ||||||||||| ||||||||| ||||||    
T  11527525 acgacaatattaacaaattattttaatgttagggactatgttgactagaaaagtgaataatcaaatactattttaaaattttgatacattgagggacta 11527623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 11534831 - 11535029
Alignment:
Q  90 ctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaat 189  Q
    |||||| ||||||||| |  | ||||||||  | |||||| || |||||||||  ||||   ||||||||||| |||| |||||||||| || || ||||    
T  11534831 ctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtcgaaataccgcctgaagtgacaataagtaagtatattaaaagattaat 11534930  T
Q  190 atgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggacta 287  Q
    |||||||||| ||  || ||||| |||| ||| |||||  |||||||   ||||| | ||||| | || | ||||||||||| ||||||||| ||||||    
T  11534931 atgacaatattaacaaattattttaatgttagagactatgttgactagaaaagtgaataatcaaatactattttaaaattttgatacattgagggacta 11535029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 26675175 - 26675123
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||||| |||||    
T  26675175 tgacaataaataagtatattgaaggact-atatgacaatattaatgaaatattt 26675123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 26946783 - 26946731
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||||| |||||    
T  26946783 tgacaataaataagtatattgaaggact-atatgacaatattaatgaaatattt 26946731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 917099 - 917219
Alignment:
Q  166 aaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaa 264  Q
    |||||| ||||||||| ||||||||||||||||| ||  || ||||| | ||  || ||||| |||||  ||| ||||||||||||| |||| | |||||    
T  917099 aaataaatatattgaatgactaatatgacaatattaacaaaatattttattgtgagagactattttgataaataaagtgtacaatcaaagactattttaa 917198  T
Q  265 aattttaatacattgatggac 285  Q
    |||||  ||||||||| ||||    
T  917199 aatttcgatacattgagggac 917219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 14460086 - 14460133
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaa 206  Q
    |||| |||| ||| ||||||||||||||||||||||||||||| ||||    
T  14460086 tgacaataagtaaatatattgaaggactaatatgacaatatcagtgaa 14460133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 14461768 - 14461822
Alignment:
Q  221 gggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaata 274  Q
    ||||||| ||||||||| ||||||||||||||||||| | |||||||||| ||||    
T  14461768 gggactattttgactaacgaagtgtacaatcagagactattttaaaatttgaata 14461822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 288
Target Start/End: Complemental strand, 23159193 - 23159071
Alignment:
Q  167 aataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaattt-aaa 265  Q
    |||||||| |||||||||| ||||||  ||||| ||||||  |||| ||    |||||||| ||| ||||| ||| || ||||||| | || |||| |||    
T  23159193 aataagtaaattgaaggacaaatatgttaatattaatgaaacatttcaacatcagggactatttttactaacgaaatgcacaatcaaatactattttaaa 23159094  T
Q  266 attttaatacattgatggactat 288  Q
    ||||| |||||||||||||||||    
T  23159093 attttgatacattgatggactat 23159071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 27001288 - 27001235
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    |||| |||| |||||||||||| ||  |||||||||||||| ||||||||||||    
T  27001288 tgacaataagtaagtatattgacggggtaatatgacaatattaatgaagtattt 27001235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 296465 - 296413
Alignment:
Q  165 taaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 217  Q
    ||||||||||||||||||  |||||| |||||||| |||||| ||||| ||||    
T  296465 taaataagtatattgaagatctaatacgacaatattaatgaaatattttaatg 296413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 7314056 - 7313980
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgact 235  Q
    |||| ||||||||||||||| | |||| ||||||||||||| || ||| ||||| |||   |||||||| |||||||    
T  7314056 tgacaataaataagtatattaagggaccaatatgacaatattaacgaaatatttaaatatgagggactattttgact 7313980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 86 - 406
Target Start/End: Original strand, 6552448 - 6552768
Alignment:
Q  86 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 185  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||    
T  6552448 taatctctcagtgtattaaaattctaaaataatccatgattttgtactttgttagtcataataggccttgaagtgacaataaataagtatattgaaggac 6552547  T
Q  186 taatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggac 285  Q
    |||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  6552548 taatgtgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaagtgtacaatcagagacaatttaaatctttaatacattgatggac 6552647  T
Q  286 tatcttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacac 385  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  6552648 tattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaaaaaacgtataagtgagatgatcgatatacctaatacac 6552747  T
Q  386 taagattttggatgatgatgt 406  Q
    |||||||||||||||||||||    
T  6552748 taagattttggatgatgatgt 6552768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 86 - 406
Target Start/End: Original strand, 312622 - 312952
Alignment:
Q  86 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 185  Q
    |||||||||| ||||||||| || ||||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  312622 taatctctcagtgtattaaaattataaaataatacatgattttgtactttattagtcataataatccctgaagtgacaataaataagtatattgaaggac 312721  T
Q  186 taatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggac 285  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  312722 taatatgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaagtgtgcaatcagagacaatttaaaattttaatacattgatggac 312821  T
Q  286 tatcttagcctcacatgtatccaatgtctagatctgtccc----------tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatata 375  Q
    ||| ||||||||||||||||||||||||| |||||||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312822 tattttagcctcacatgtatccaatgtctcgatctgtctcgatctgtctgtggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatata 312921  T
Q  376 cctaatacactaagattttggatgatgatgt 406  Q
    |||||||||||||||||||||||||||||||    
T  312922 cctaatacactaagattttggatgatgatgt 312952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 135 - 402
Target Start/End: Original strand, 6552897 - 6553164
Alignment:
Q  135 tgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgac 234  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||| ||||| ||||||    
T  6552897 tgttagtcataataggccttgaagtgacaataaataagtatattgaaggactaatgagacaatatcaatgaagtatttgaatgttagagactattttgac 6552996  T
Q  235 taatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactatcttagcctcacatgtatccaatgtctagatctgtccctggatgcaa 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  6552997 taatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctagatctgtccctagatgcaa 6553096  T
Q  335 aagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatg 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6553097 aagtaaatgttaagaaacatataagtgagatgatcgatatacctaatagactaagattttggatgatg 6553164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 38932689 - 38932870
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    ||||||||| || ||||||| ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  38932689 tgtattaaaattttaaaatagtccatgattttgtacattgttagtcataatagtctctgaagtgacaataaataagtatattgaaggactaatatgacaa 38932788  T
Q  197 tatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacatt 278  Q
    ||| |||||| ||||| |||| ||| ||||| |||||||||  || |||||||||  ||||||||||||||||| |||||||    
T  38932789 tattaatgaaatattttaatgttagagactattttgactaacaaaatgtacaatcgaagacaatttaaaattttgatacatt 38932870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 97 - 319
Target Start/End: Original strand, 48827963 - 48828185
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    |||||| || || ||||||| ||| |||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||||||||  |||||||||||    
T  48827963 tgtatttaaattttaaaatagtccctgattttgtactttattagtcgtaatagtccctgaagtgacaataagtaagtatattgaagggttaatatgacaa 48828062  T
Q  197 tatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactatcttagcct 296  Q
    ||| ||||| ||||||  ||  ||||||||| ||| ||||| ||||| |||||||| || ||||| |||||||  ||||||||| || |||| ||||||     
T  48828063 tattaatgacgtatttttatattagggactattttaactaacgaagtatacaatcaaaggcaattgaaaatttcgatacattgagggtctattttagccc 48828162  T
Q  297 cacatgtatccaatgtctagatc 319  Q
    ||||| |||| ||||||||||||    
T  48828163 cacatatatcaaatgtctagatc 48828185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 280
Target Start/End: Original strand, 26499322 - 26499519
Alignment:
Q  86 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 185  Q
    |||||||| | ||||||||| ||||||||||||  |||||||| |||||||||||||| |||||  | |||| |||  || | ||||||||||||| |||    
T  26499322 taatctcttaatgtattaaaattctaaaataataaatgattttatactttgttagtcaaaatagctcatgaaatgataattagtaagtatattgaatgac 26499421  T
Q  186 taatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgta---caatcagagacaatttaaaattttaatacattga 280  Q
    |||||||||||||| |||||||||||| |||| || |||||| ||||||||| ||||| ||    | || ||||||||||| |||||| |||||||||    
T  26499422 taatatgacaatattaatgaagtattttaatgttacggactattttgactaacgaagtctatagtagtctgagacaatttacaattttgatacattga 26499519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 47097347 - 47097495
Alignment:
Q  89 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 188  Q
    ||||||| ||||||||| || ||||||||| |||||||||||||||||| |||||||  |||| || || |||| ||||||||||||||| |||||||||    
T  47097347 tctctcaatgtattaaaattttaaaataattcatgattttgtactttgtaagtcatagcagtctctaaactgacaataaataagtatattaaaggactaa 47097446  T
Q  189 tatgacaatatcaatgaagtatttgaatgatagggactaatttgactaa 237  Q
    ||||||||||| ||| |||||||| | || ||  ||||| |||||||||    
T  47097447 tatgacaatattaataaagtattttagtgttaaagactattttgactaa 47097495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 288
Target Start/End: Complemental strand, 51151082 - 51150882
Alignment:
Q  87 aatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggact 186  Q
    ||||||||| ||||||||| || ||||||| ||  |||||||  ||| |||| |||| |||||||||| ||||||| |||| |||||||||||||| |||    
T  51151082 aatctctcaatgtattaaaattttaaaatagtctctgattttc-actctgttggtcaaaatagtccct-aagtgacaataagtaagtatattgaagtact 51150985  T
Q  187 aatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatca-gagacaatttaaaattttaatacattgatggac 285  Q
    ||||||||||||| ||  || ||||| |||| ||||||||| ||| |||||  || || ||||||| ||   | ||||||||||| |||||||||||| |    
T  51150984 aatatgacaatattaacaaaatattttaatgttagggactattttcactaacaaaatgcacaatcacgaactattttaaaattttgatacattgatggtc 51150885  T
Q  286 tat 288  Q
    |||    
T  51150884 tat 51150882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 97 - 288
Target Start/End: Original strand, 45615656 - 45615849
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    ||||||||| || ||||||| ||  |||||||| ||||| ||||||| ||||||   ||||||||| |||| |||||||||||||||||||| |||||||    
T  45615656 tgtattaaaattttaaaatagtctctgattttgcactttattagtcaaaatagtttttgaagtgacaataagtaagtatattgaaggactaaaatgacaa 45615755  T
Q  197 tatcaatgaagtatttgaatgatagggactaatttgactaatgaagtg--tacaatcagagacaatttaaaattttaatacattgatggactat 288  Q
    ||| ||  || ||||| |||  ||| ||||| |||||||||  |||||   |||||||  ||| |||||||||||  | ||||||| |||||||    
T  45615756 tattaacaaattattttaatattagagactattttgactaacaaagtgcacacaatcaaggactatttaaaatttcgaaacattgagggactat 45615849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 287
Target Start/End: Complemental strand, 56095259 - 56095063
Alignment:
Q  91 tctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaata 190  Q
    ||||| ||||||||| || ||||||  ||  |||||||| ||||||||||||| ||||| |  ||||||||| |||| |||||||||| || ||||||||    
T  56095259 tctcattgtattaaaattttaaaattgtctctgattttgcactttgttagtcaaaataggct-tgaagtgacaataagtaagtatattaaaagactaata 56095161  T
Q  191 tgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggacta 287  Q
    ||||||||| ||  || ||||| |||| |||||||||  |||||||   ||||| | ||||| | || | ||||||||||| ||||||||| ||||||    
T  56095160 tgacaatattaacaaattattttaatgttagggactatgttgactagaaaagtgaataatcaaatactattttaaaattttgatacattgagggacta 56095063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 97 - 288
Target Start/End: Complemental strand, 13834561 - 13834369
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    ||||||||| || ||||||| ||  |||||||  ||||  ||||||| ||||||   | ||||||| |||| ||||||||||||||||||||||||||||    
T  13834561 tgtattaaaattttaaaatagtctctgattttacacttcattagtcaaaatagtttttaaagtgacaataagtaagtatattgaaggactaatatgacaa 13834462  T
Q  197 tatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggactat 288  Q
    ||| ||  || ||||| |||| ||  ||||| |||||||||  ||||| |||||||  ||| | ||||||||||| ||| ||||| |||||||    
T  13834461 tattaacaaattattttaatgttaaagactattttgactaacaaagtgcacaatcaaggactattttaaaattttgataaattgagggactat 13834369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 38080856 - 38081000
Alignment:
Q  145 aatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtg 244  Q
    ||||||| | |||||||| ||||||||||||||||||| ||||||||||| |||| ||  |||||||| |||| ||   |||| ||||||||| ||| ||    
T  38080856 aatagtctcggaagtgacaataaataagtatattgaagtactaatatgactatattaacaaagtattttaatgttacaaactattttgactaacgaaatg 38080955  T
Q  245 tacaatcagagac-aatttaaaattttaatacattgatggactat 288  Q
     | ||||  |||| | ||||||||||| |||||||||||||||||    
T  38080956 cataatcgtagactattttaaaattttgatacattgatggactat 38081000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 7617005 - 7616903
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    ||||||||| || ||||||| |   |||||||| ||||||||||||| |||||||| | || |||| |||||||||||||||||| ||||||||||| ||    
T  7617005 tgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtccattaaatgacaataaataagtatattgaatgactaatatgataa 7616906  T
Q  197 tat 199  Q
    |||    
T  7616905 tat 7616903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 312471 - 312552
Alignment:
Q  4 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 87  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||  ||||||| | ||||  |||||||||||||||||||||    
T  312471 agtaaaaatttcactttgtatgaaatgaggggtggatctatgtta--ggctatgtggggctaaagccccacatgcccttcccta 312552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 288
Target Start/End: Original strand, 8170895 - 8171025
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac- 257  Q
    |||| |||| |||||||||||||| |||||||||||||||| ||||||  |||| |||  ||| || || ||||||||| ||| || | ||||||||||     
T  8170895 tgacaataagtaagtatattgaagtactaatatgacaatattaatgaaacattttaatattagagattattttgactaacgaattgcaaaatcagagact 8170994  T
Q  258 aatttaaaattttaatacattgatggactat 288  Q
    | ||| ||||||| ||||||||| |||||||    
T  8170995 attttgaaatttttatacattgagggactat 8171025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 11839940 - 11839848
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatc 251  Q
    |||| |||| ||||| ||||||||||||||||||||||||| || ||||||||| ||||  | |||||| ||||||||| || ||| ||||||    
T  11839940 tgacaataagtaagtgtattgaaggactaatatgacaatattaacgaagtattttaatgtcaaggactattttgactaacgaggtgcacaatc 11839848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 288
Target Start/End: Original strand, 32934038 - 32934204
Alignment:
Q  122 tgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatag 221  Q
    |||||||| ||||| ||||||| ||||| || ||||||||| | || |||||||||| || ||||||| ||||||||| ||  || ||||| |||| |||    
T  32934038 tgattttgcactttattagtcaaaatag-ccttgaagtgacaacaagtaagtatattaaaagactaatgtgacaatattaacaaattattttaatgttag 32934136  T
Q  222 ggactaatttgactaatgaagtgtacaatcagagacaattt-aaaattttaatacattgatggactat 288  Q
      |||| ||||||||   ||||| ||||||| | || |||| |||||||| ||||||||| |||||||    
T  32934137 aaactattttgactagcaaagtgcacaatcaaaaactattttaaaattttgatacattgagggactat 32934204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 6552296 - 6552376
Alignment:
Q  5 gtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 87  Q
    ||||||||||||||| |||||||| || |||||||||||||||| ||||| || | ||||  |||||||||||||||||||||    
T  6552296 gtaaaaatttcactttgtatgaaa-catgggcggatctatgtta-gggctttgtggggctaaagccccacatgcccttcccta 6552376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 8755906 - 8755983
Alignment:
Q  167 aataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtg 244  Q
    |||||||||||| ||||| |||||||||||||| || ||||||||| |||| ||| ||||| ||||| ||| ||||||    
T  8755906 aataagtatattaaaggattaatatgacaatattaacgaagtattttaatgttagagactattttgattaacgaagtg 8755983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 17381489 - 17381614
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aattt 262  Q
    |||| ||||||||||||||||||||||||||||||| || ||| ||||| |||   | |||||| ||||| |||  ||||| |||||||| ||| | |||    
T  17381489 ataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaatatcaaggactattttgattaacaaagtgcacaatcagggactatttt 17381588  T
Q  263 aaaattttaatacattgatggactat 288  Q
      |||||| ||||||||| |||||||    
T  17381589 ggaattttgatacattgagggactat 17381614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 48973337 - 48973390
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  48973337 tgacaataagtaagtatattgaaggactaatatgacaatattaatgaagcattt 48973390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 280
Target Start/End: Original strand, 46804961 - 46805072
Alignment:
Q  169 taagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaa-tttaaaat 267  Q
    |||||||||||||| ||| | |||| ||||| |||||| ||||| |||   |||||||| |||||| || |||| | |||||||||||||| ||||||||    
T  46804961 taagtatattgaagaactgacatgataatattaatgaaatattttaatatcagggactattttgaccaacgaag-gcacaatcagagacaattttaaaat 46805059  T
Q  268 tttaatacattga 280  Q
    ||||||| |||||    
T  46805060 tttaatatattga 46805072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 13834508 - 13834563
Alignment:
Q  224 actaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacatt 278  Q
    |||| |||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  13834508 actattttgactaatgaagtgtaaaatcagagactattttaaaattttaatacatt 13834563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 46804863 - 46804797
Alignment:
Q  223 gactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggactat 288  Q
    ||||| |||||||||  |||||||||||||||||| | ||||||||||| ||||||||| |||||||    
T  46804863 gactattttgactaacaaagtgtacaatcagagactattttaaaattttgatacattgagggactat 46804797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 321
Target Start/End: Complemental strand, 7616848 - 7616755
Alignment:
Q  229 tttgactaatgaagtgtacaatcagagacaa-tttaaaattttaatacattgatggactatcttagcctcacatgtatccaatgtctagatctg 321  Q
    ||||||||| ||| |||||||| |||||||| ||||||||||||||||| |||   ||||| |||||  ||||| |||| |||||||| |||||    
T  7616848 tttgactaacgaaatgtacaattagagacaaatttaaaattttaatacactgaaaaactattttagctccacatatatcaaatgtctaaatctg 7616755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 39331100 - 39331219
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac- 257  Q
    |||| |||||||||||||||||| |||| |||| ||||||| ||||||| |||| |||   | ||||| ||||||| || |||||| ||||||| | ||     
T  39331100 tgacaataaataagtatattgaaagactgatataacaatattaatgaagcattttaatatcatggact-atttgacaaacgaagtgcacaatcaaaaact 39331198  T
Q  258 aatttaaaattttaatacatt 278  Q
    | |||||||||| ||||||||    
T  39331199 attttaaaatttcaatacatt 39331219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 4161825 - 4161864
Alignment:
Q  167 aataagtatattgaaggactaatatgacaatatcaatgaa 206  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  4161825 aataagtatattgaagaactaatatgacaatattaatgaa 4161864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 274
Target Start/End: Complemental strand, 7912645 - 7912534
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaattt- 262  Q
    |||| ||||||||||||| || | || || |||||| ||||||| |||| |||   |||||||| |||||||| ||||||| ||||| |||||| ||||     
T  7912645 ataagtaagtatattgaatgattgatgtgtcaatattaatgaagcattttaatatgagggactattttgactagtgaagtgcacaattagagactatttc 7912546  T
Q  263 aaaattttaata 274  Q
    ||||||| ||||    
T  7912545 aaaatttcaata 7912534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 31903429 - 31903370
Alignment:
Q  153 ctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    ||||| |||| |||| |||||||||||||||||| |||||||||||  |||||| |||||    
T  31903429 ctgaaatgacaataagtaagtatattgaaggactgatatgacaatactaatgaattattt 31903370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 36409659 - 36409694
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatat 199  Q
    |||| |||||||||||||||||||||||||||||||    
T  36409659 ataagtaagtatattgaaggactaatatgacaatat 36409694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 36423825 - 36423860
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatat 199  Q
    |||| |||||||||||||||||||||||||||||||    
T  36423825 ataagtaagtatattgaaggactaatatgacaatat 36423860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 24806664 - 24806746
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaa 241  Q
    |||| |||| |||||||||||||  |||| ||||||||||| ||  || ||||| |||| ||| ||||| |||||||||||||    
T  24806664 tgacaataagtaagtatattgaaaaactactatgacaatattaacaaattattttaatgttagagactattttgactaatgaa 24806746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 9297518 - 9297465
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 217  Q
    ||||||||||||||| || ||||||||||||||||| ||  |||||||| ||||    
T  9297518 ataaataagtatatttaatgactaatatgacaatattaacaaagtattttaatg 9297465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 45615709 - 45615652
Alignment:
Q  224 actaatttgactaatgaagtgtacaatcagagacaattt-aaaattttaatacattga 280  Q
    |||| |||||||||| ||||| | |||||||||| |||| ||||||||||||||||||    
T  45615709 actattttgactaataaagtgcaaaatcagagactattttaaaattttaatacattga 45615652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 280
Target Start/End: Complemental strand, 1758454 - 1758349
Alignment:
Q  174 atattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaa 272  Q
    ||||||||||||||  |||||||||| || ||||||||| ||||  | |||||| ||||||||| |||||  ||||| ||| || | ||| ||||||| |    
T  1758454 atattgaaggacta--atgacaatattaacgaagtattttaatgtcaaggactattttgactaacgaagtacacaataagaaactattttgaaattttga 1758357  T
Q  273 tacattga 280  Q
    ||||||||    
T  1758356 tacattga 1758349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 6561023 - 6561075
Alignment:
Q  326 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 378  Q
    ||||| |||||||| |||||||  |||||||||||||||||| | ||||||||    
T  6561023 tggatacaaaagtagatgttaaacaacatataagtgagatgaccaatatacct 6561075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 46805855 - 46805803
Alignment:
Q  229 tttgactaatgaagtgtacaatcagagacaa-tttaaaattttaatacattga 280  Q
    ||||||||| ||||||||||||||  ||| | |||||||||||||||||||||    
T  46805855 tttgactaacgaagtgtacaatcaatgactactttaaaattttaatacattga 46805803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 86 - 406
Target Start/End: Complemental strand, 31967613 - 31967293
Alignment:
Q  86 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 185  Q
    |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||||||||||    
T  31967613 taatctctcagtgtattaaaattctaaaagaatccatgattttgtactttgttagtcataatagtctctgaagtgacagtaaaaaagtatattgaaggac 31967514  T
Q  186 taatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggac 285  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||    
T  31967513 taatatgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaagtgtacaatcagagacaacttaaattttttataaattgatggac 31967414  T
Q  286 tatcttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacac 385  Q
    ||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31967413 tactttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacac 31967314  T
Q  386 taagattttggatgatgatgt 406  Q
    |||||||||||||||||||||    
T  31967313 taagattttggatgatgatgt 31967293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 89 - 319
Target Start/End: Complemental strand, 41746568 - 41746338
Alignment:
Q  89 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 188  Q
    ||||||| |||||| || |||||||||| | |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  41746568 tctctcaatgtatttaaattctaaaatagttcatgattttgtacttttttagacataatagtccctgaagtgacaataaataagtatattgaagggctaa 41746469  T
Q  189 tatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactat 288  Q
    ||||||||||| |||||||||||| |||| ||| ||||| ||||| ||| ||||| |||||||||||||||||||||||||| ||| ||| | || ||||    
T  41746468 tatgacaatattaatgaagtattttaatgttagagactattttgaataacgaagtatacaatcagagacaatttaaaattttgatatattaagggtctat 41746369  T
Q  289 cttagcctcacatgtatccaatgtctagatc 319  Q
     |||||| ||||| |||| ||||||||||||    
T  41746368 tttagccccacatatatcaaatgtctagatc 41746338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 288
Target Start/End: Complemental strand, 40124431 - 40124306
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagaga-caattt 262  Q
    |||| ||||||||||||||| ||||||||||||||| ||||||||| || |||| || |||||| ||||||||| | |||| ||||||||||| || |||    
T  40124431 ataagtaagtatattgaagggctaatatgacaatattaatgaagtactttaatgttatggactattttgactaacggagtgcacaatcagagaccatttt 40124332  T
Q  263 aaaattttaatacattgatggactat 288  Q
    |||||||  ||||||| |||||||||    
T  40124331 aaaatttcgatacattaatggactat 40124306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 252
Target Start/End: Complemental strand, 7165798 - 7165643
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    ||||||||| || ||||||| ||  |||||||| ||||| ||||| | |||||||  ||||||||| |||| ||||||||||||| ||||||||||| ||    
T  7165798 tgtattaaaattttaaaatagtctctgattttgcactttattagttaaaatagtctttgaagtgacaataagtaagtatattgaaagactaatatgaaaa 7165699  T
Q  197 tatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatca 252  Q
    ||| ||  || ||||| |||| || |||||| |||||||||| ||||| |||||||    
T  7165698 tattaacaaattattttaatgttaaggactattttgactaataaagtgcacaatca 7165643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 324
Target Start/End: Complemental strand, 9470797 - 9470617
Alignment:
Q  143 ataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaag 242  Q
    |||||||||| | ||||||  |||| ||||||||||||||  |||| |||| || || |||||||||||| |||  ||| || || ||| |||||  |||    
T  9470797 ataatagtccgttaagtgataataagtaagtatattgaagagctaacatgataa-attaatgaagtattttaattttagagattattttaactaacaaag 9470699  T
Q  243 tgtacaatcagagacaatttaaaattttaatacattgatggactatcttagcctcacatgtatccaatgtctagatctgtcc 324  Q
    | |||||| ||||||||||||||||||| ||| ||| |  |||||| ||| || |||||||||| |||||||||||| ||||    
T  9470698 tatacaattagagacaatttaaaattttgatatatttagtgactattttaaccccacatgtatcaaatgtctagatccgtcc 9470617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 97 - 236
Target Start/End: Original strand, 17742516 - 17742654
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    ||||||||| || ||||||| ||  |||||||| ||||||||||| | ||||| |||||||||||| |||| |||||||||| || ||||||||||||||    
T  17742516 tgtattaaaattttaaaatagtctctgattttgcactttgttagttaaaatag-ccctgaagtgacaataagtaagtatattaaaagactaatatgacaa 17742614  T
Q  197 tatcaatgaagtatttgaatgatagggactaatttgacta 236  Q
    ||| ||  || ||||| |||| |||| |||| | ||||||    
T  17742615 tattaacaaattatttaaatgttaggcactattgtgacta 17742654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 319
Target Start/End: Complemental strand, 23077922 - 23077824
Alignment:
Q  221 gggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactatcttagcctcacatgtatccaatgtctagatc 319  Q
    ||||||| |||||||||  ||||  ||||||| |||||| |||||||||| ||||||||| | ||||| |||||| ||||||||||| |||||||||||    
T  23077922 gggactattttgactaacaaagtcaacaatcaaagacaacttaaaattttgatacattgaggaactattttagccccacatgtatccgatgtctagatc 23077824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 9471845 - 9471792
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagt 150  Q
    ||||||||| |||||||||| ||  || ||||||||||||||||||||||||||    
T  9471845 tgtattaaaattctaaaatagtcattgtttttgtactttgttagtcataatagt 9471792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 33261075 - 33260990
Alignment:
Q  167 aataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatca 252  Q
    |||||||||||||||| | ||||||||||||||||| ||| ||||| | ||  |  ||||| ||||||||| ||||||| ||||||    
T  33261075 aataagtatattgaagaaataatatgacaatatcaacgaaatattttactgtcaaagactattttgactaacgaagtgttcaatca 33260990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 15301526 - 15301598
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgacta 236  Q
    |||| |||||||||||||| ||||||| |||||||| || ||||||||| ||||  || ||||| ||||||||    
T  15301526 ataagtaagtatattgaagtactaataagacaatattaacgaagtattttaatgtcagagactattttgacta 15301598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 367
Target Start/End: Complemental strand, 36727670 - 36727631
Alignment:
Q  328 gatgcaaaagtaaatgttaagaaacatataagtgagatga 367  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  36727670 gatgcaaaagtagatgttaagaaacatatatgtgagatga 36727631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 12676553 - 12676513
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatat 199  Q
    |||| ||| ||||||||||||| ||||||||||||||||||    
T  12676553 tgacaatagataagtatattgagggactaatatgacaatat 12676513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 15816942 - 15816894
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    |||| ||||||| ||||||||||||||||||||||| ||  ||||||||    
T  15816942 ataagtaagtatcttgaaggactaatatgacaatattaacaaagtattt 15816894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 36720129 - 36720169
Alignment:
Q  341 atgttaagaaacatataagtgagatgatcgatatacctaat 381  Q
    ||||| || |||||||||||||||||||| |||||||||||    
T  36720129 atgttgagcaacatataagtgagatgatccatatacctaat 36720169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 86 - 406
Target Start/End: Original strand, 49880091 - 49880412
Alignment:
Q  86 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 185  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||    
T  49880091 taatctctcagtgtattaaa-ttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacaataagtaagtatattgaaagac 49880189  T
Q  186 taatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggac 285  Q
    ||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  49880190 taatatgacaatatcaatgaagtattttaatgttagggactattttgactaatgaagtgtacaatcagagacaatttaaaatttaaatacattggtggac 49880289  T
Q  286 tatcttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgat--cgatatacctaatac 383  Q
    ||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  49880290 tattttagtctcgcatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgataaagatatacctaatac 49880389  T
Q  384 actaagattttggatgatgatgt 406  Q
    ||||||||||||  |||||||||    
T  49880390 actaagattttgattgatgatgt 49880412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 112 - 406
Target Start/End: Complemental strand, 45919969 - 45919675
Alignment:
Q  112 aaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatt 211  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||   |||||||||||||||||||||||||    
T  45919969 aaataattcatgattttgtactttgttagtcataatagtccctaaagtgacaataagtaagtatattgaagggtcaatatgacaatatcaatgaagtatt 45919870  T
Q  212 tgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactatcttagcctcacatgtatccaatg 311  Q
    | |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||    
T  45919869 ttaatgttagggattattttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattggtggactattttagtctcacatgtatccaatg 45919770  T
Q  312 tctagatctgtccctggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgt 406  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45919769 tctagatccgtccctggatgcaaaagtaaatgttaagaaatatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgt 45919675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 89 - 280
Target Start/End: Complemental strand, 9890758 - 9890571
Alignment:
Q  89 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 188  Q
    ||||||| ||||||||| ||||||||||   |||||||||| ||||||||||||| |||||||||| || ||||    ||||||||||||||||||||||    
T  9890758 tctctcaatgtattaaaattctaaaatagatcatgattttgcactttgttagtcaaaatagtcccttaaatgac----aataagtatattgaaggactaa 9890663  T
Q  189 tatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattga 280  Q
    ||||||||||| || ||||||||  |||| || ||| || ||||||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  9890662 tatgacaatattaacgaagtattctaatgttaaggattattttgactaacgaaatgtacaatcaaagacaatttaaaattttaatacattga 9890571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 97 - 327
Target Start/End: Complemental strand, 40872776 - 40872549
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    ||||||||| || ||| ||| ||| ||||||||||||||||||||||||   |||| ||||||||| |||| ||||||||||  ||| ||||||||||||    
T  40872776 tgtattaaaattttaatatagtccctgattttgtactttgttagtcata---gtccttgaagtgacaataagtaagtatattatagggctaatatgacaa 40872680  T
Q  197 tatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactatcttagcct 296  Q
    ||| ||| |||||||| ||||  | | |||| ||||||||| ||| ||||||||   | | ||||||||||||| ||||||| | ||||||| |||||||    
T  40872679 tattaattaagtattttaatgtaacgaactattttgactaacgaattgtacaatttaaaaaaatttaaaattttgatacattaagggactattttagcct 40872580  T
Q  297 cacatgtatccaatgtctagatctgtccctg 327  Q
    ||||| |||| |||||||| || ||||||||    
T  40872579 cacatatatcaaatgtctaaatttgtccctg 40872549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 89 - 280
Target Start/End: Original strand, 27463771 - 27463963
Alignment:
Q  89 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 188  Q
    ||||||| ||||||||| |||||||||| ||  | |||||| ||||||||||||| |||||||  |||| |||| |||| ||||||||||||| ||||||    
T  27463771 tctctcaatgtattaaaattctaaaatagtctctaattttgcactttgttagtcaaaatagtctttgaaatgacaataagtaagtatattgaaagactaa 27463870  T
Q  189 tatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattga 280  Q
    ||| ||||||| ||  |||||||| || | |||| |||| |||| |||| |||||| |||| ||||||| | ||| ||||||| |||||||||    
T  27463871 tataacaatattaacaaagtattttaacgttaggaactattttgtctaacgaagtgcacaaccagagactattttgaaattttgatacattga 27463963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 97 - 319
Target Start/End: Complemental strand, 16658307 - 16658084
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatat-tgaaggactaatatgaca 195  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||  |||| |||||||||   ||||  | ||||||      
T  16658307 tgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagttcatgaagtgataataagtaagtatatcaaaagggttgatatgaat 16658208  T
Q  196 atatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactatcttagcc 295  Q
    |||| |||||||||||| |||| |||  |||| |||||| |  ||| |||||||| |||||||||||||  |||| ||| ||| | ||||||| ||| ||    
T  16658207 atattaatgaagtattttaatgttagaaactattttgaccatcgaaatgtacaattagagacaatttaatttttttatatatttagggactattttaacc 16658108  T
Q  296 tcacatgtatccaatgtctagatc 319  Q
     ||||| |||| ||| ||||||||    
T  16658107 ccacatatatcaaatatctagatc 16658084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 145 - 318
Target Start/End: Original strand, 47921876 - 47922047
Alignment:
Q  145 aatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtg 244  Q
    |||||||| |||| |||| |||| |||||||||||||||  |||||||| || || ||||||||||   |||| |||||| || ||||||||||||| ||    
T  47921876 aatagtccatgaactgacaataagtaagtatattgaagggttaatatgataagattaatgaagtatcataatgttagggattattttgactaatgaaatg 47921975  T
Q  245 tacaatcagagacaatttaaaattttaatacattgatggactatcttagcctcacatgtatccaatgtctagat 318  Q
    |||||||| | ||||||||||| ||| |||||||||   ||||  ||| ||||||||||||| ||||| |||||    
T  47921976 tacaatcaaaaacaatttaaaaattttatacattgagaaacta--ttaacctcacatgtatcaaatgtttagat 47922047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 31738433 - 31738321
Alignment:
Q  86 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 185  Q
    |||||||||| ||||||| | || |||||||||   |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| || ||     
T  31738433 taatctctcaatgtattagaattttaaaataatttttgattttgtactttgttagtcaaaatagt-cctgaagtgacaataaataagtatattaaatgat 31738335  T
Q  186 taatatgacaatat 199  Q
    ||||||||||||||    
T  31738334 taatatgacaatat 31738321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 8069009 - 8069161
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    ||||||||| |||||||||| | |||||||||| ||||||||||||| || ||| ||| || |||  |||| |||||||||||| ||| |||||||||||    
T  8069009 tgtattaaaattctaaaatagttcatgattttgcactttgttagtca-aaaagttccttaaatgataataagtaagtatattgatggattaatatgacaa 8069107  T
Q  197 tatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaat 250  Q
    ||| ||  || ||||| |||  || ||| || ||||||||| ||| ||||||||    
T  8069108 tattaacaaaatattttaatattaaggattattttgactaacgaaatgtacaat 8069161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 217
Target Start/End: Original strand, 52361954 - 52362074
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    ||||||||| || ||||||| ||  |||||||| ||||| ||| ||| |||| ||  ||||||||  |||||||||||||| |||| |||||||||| ||    
T  52361954 tgtattaaaattttaaaatagtctctgattttgcactttattattcaaaataatcaatgaagtgataataaataagtatatcgaagaactaatatgataa 52362053  T
Q  197 tatcaatgaagtatttgaatg 217  Q
    ||| ||  |||||||| ||||    
T  52362054 tattaacaaagtattttaatg 52362074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 6541176 - 6541118
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 217  Q
    |||| |||| ||||||||||||||||||||||||||||||| || ||| ||||| ||||    
T  6541176 tgacaataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaatg 6541118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 33747858 - 33747898
Alignment:
Q  166 aaataagtatattgaaggactaatatgacaatatcaatgaa 206  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  33747858 aaataagtatattgaaggattaatatgacaatattaatgaa 33747898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 34826996 - 34827036
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatat 199  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  34826996 tgacaataaataagtatattgaatgactaatatgacaatat 34827036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 16853665 - 16853736
Alignment:
Q  335 aagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgt 406  Q
    |||||||| || | ||||||||||||||||||||| |||||| |||| |  |||| |||||| |||||||||    
T  16853665 aagtaaatcttgaaaaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatgt 16853736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 31088829 - 31088751
Alignment:
Q  326 tggatgcaaaagtaaatgttaagaaacatata--agtgagatgatcgatatacctaatacactaagattttggatgatg 402  Q
    ||||||||| ||||  |||| |||||||||||  |||||||||||| ||||||||||| |  ||| |||||||||||||    
T  31088829 tggatgcaagagtaggtgttgagaaacatatataagtgagatgatcaatatacctaatgccttaatattttggatgatg 31088751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 51849552 - 51849618
Alignment:
Q  223 gactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggactat 288  Q
    ||||| ||||||||| |||||||||||||| | || | ||||||||||||||||||| | |||||||    
T  51849552 gactattttgactaaagaagtgtacaatcacaaactattttaaaattttaatacattcagggactat 51849618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 49879921 - 49879977
Alignment:
Q  30 caggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 87  Q
    |||||||||||||||||| ||||||||| | ||||  |||||||||||| ||||||||    
T  49879921 caggggcggatctatgtt-agggctatgtggggctaaagccccacatgctcttcccta 49879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 38267350 - 38267398
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    |||| ||| |||||||||||| |||||||||||||| ||||||| ||||    
T  38267350 ataagtaaatatattgaaggattaatatgacaatattaatgaagcattt 38267398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 86 - 406
Target Start/End: Original strand, 50239800 - 50240103
Alignment:
Q  86 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 185  Q
    |||||||||| ||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  50239800 taatctctcagtgtattaaaattctaaaataatccatgtttatgtactttgttagttataatagtccctgaagtgacaataaataagtatattgaaggac 50239899  T
Q  186 taatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggac 285  Q
    |||||||||||||||||| ||||||||||||| |  |||||| |||||||||| ||||||||||||||||                  ||||||||||||    
T  50239900 taatatgacaatatcaattaagtatttgaatgtt--ggactattttgactaataaagtgtacaatcagag------------------acattgatggac 50239979  T
Q  286 tatcttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgtta---agaaacatataagtgagatgatcgatatacctaata 382  Q
    ||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  50239980 tattttagcctcacatgtagccaatgtctagatctgtccctcgatgcaaaagtaaatgttaattagaaacatataagtgagatgatcgatatacctaata 50240079  T
Q  383 cactaagattttggatgatgatgt 406  Q
    ||||||||||||||||||||||||    
T  50240080 cactaagattttggatgatgatgt 50240103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 97 - 325
Target Start/End: Original strand, 7672391 - 7672615
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||  ||||||||| |||| || |||||||||||  |||| ||||||     
T  7672391 tgtattaaaattctaaaataattcatgattttgtactttgttagtcataatagtca-tgaagtgacaataagta-gtatattgaagagctaa-atgaca- 7672486  T
Q  197 tatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactatcttagcct 296  Q
    |||  ||||||||||| |||| ||| ||||| |||||||||  || |||||||||||||||||||||||||||||||||||||||| ||||| ||| ||     
T  7672487 tattgatgaagtattttaatgttagagactattttgactaacaaaatgtacaatcagagacaatttaaaattttaatacattgatgaactattttaacca 7672586  T
Q  297 cacatgtatccaatgtctagatctgtccc 325  Q
     ||||||||| ||| |||||||| |||||    
T  7672587 tacatgtatcaaatatctagatccgtccc 7672615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 312
Target Start/End: Original strand, 43838486 - 43838718
Alignment:
Q  91 tctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaata 190  Q
    ||||| ||||||||| || ||||||| ||  ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| ||||||    
T  43838486 tctcaatgtattaaaattttaaaatagtctttgattttgtactttgttagtcataatagtccatgaagtgacaataagtaagtatattgaagggctaata 43838585  T
Q  191 t-----------gacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattg 279  Q
    |           |||||||| |||||||||||| |||| | | || || ||||||||| || ||||| ||||||||||||| ||||||||| ||||||||    
T  43838586 tgactaacgagggacaatattaatgaagtattttaatgttcgagattattttgactaacgatgtgtagaatcagagacaatgtaaaattttgatacattg 43838685  T
Q  280 atggactatcttagcctcacatgtatccaatgt 312  Q
    | | ||||| |||||| |||||||||| |||||    
T  43838686 aggaactattttagccccacatgtatcaaatgt 43838718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 288
Target Start/End: Complemental strand, 30006293 - 30006169
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaattta 263  Q
    |||||||||||||||||||   |||||| | ||||| |||||| ||||| |||| || |  ||| ||||||||| ||| |||||||||||||| ||||||    
T  30006293 ataaataagtatattgaagagataatataataatattaatgaaatattttaatgttaagagctattttgactaacgaaatgtacaatcagagataattta 30006194  T
Q  264 aaattttaatacattgatggactat 288  Q
    ||||||||||||||||  |||||||    
T  30006193 aaattttaatacattgtgggactat 30006169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 50239649 - 50239731
Alignment:
Q  4 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 87  Q
    |||||||||||||||| |||||||||||| || |||| |||||| ||||||||| ||||||  |||||||||||||||||||||    
T  50239649 agtaaaaatttcactttgtatgaaatcagcggtggatatatgtt-agggctatgtgaggctaaagccccacatgcccttcccta 50239731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 14984567 - 14984484
Alignment:
Q  170 aagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcag 253  Q
    ||||||||||||||| |||||||||||||| || ||| ||||| ||||  ||| |||| ||||||||| |||||| ||||||||    
T  14984567 aagtatattgaaggattaatatgacaatattaacgaaatattttaatgtcaggaactattttgactaacgaagtgcacaatcag 14984484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 30843711 - 30843658
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    |||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||    
T  30843711 tgacaataaataagtatattgaaagactaatatgacaatattaatgaagcattt 30843658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 3941704 - 3941666
Alignment:
Q  172 gtatattgaaggactaatatgacaatatcaatgaagtat 210  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  3941704 gtatattgaaggactaatatgacaatattaatgaagtat 3941666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 280
Target Start/End: Original strand, 23195656 - 23195778
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagaga-c 257  Q
    |||| |||| ||||||||||||| ||||||||||||||||| || ||| || || ||||  |  ||||| ||  ||||||||| || ||||||||| |      
T  23195656 tgacaataattaagtatattgaaagactaatatgacaatattaacgaaatactttaatgtcatagactatttgaactaatgaaatgcacaatcagaaatt 23195755  T
Q  258 aatttaaaattttaatacattga 280  Q
    | |||||||||||||||||||||    
T  23195756 attttaaaattttaatacattga 23195778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 26499887 - 26499839
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    |||||||||||||||||| |||| |||||| ||||| ||||||||||||    
T  26499887 ataaataagtatattgaatgactgatatgaaaatattaatgaagtattt 26499839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 22235295 - 22235229
Alignment:
Q  223 gactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggactat 288  Q
    ||||| ||||||||| ||||||||||||||| ||| | ||| ||||||||||||||| | |||||||    
T  22235295 gactattttgactaacgaagtgtacaatcagcgactattttgaaattttaatacattcaaggactat 22235229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 34979110 - 34979188
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaa 237  Q
    |||| |||| ||||||||||||| ||||||||||| ||||| || ||| ||||| ||||  || ||||| |||||||||    
T  34979110 tgacaataagtaagtatattgaatgactaatatgataatattaacgaaatattttaatgtgagagactattttgactaa 34979188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 12832219 - 12832260
Alignment:
Q  171 agtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    |||||||||||||||| |||||||||||| ||||||| ||||    
T  12832219 agtatattgaaggacttatatgacaatattaatgaagcattt 12832260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 14249290 - 14249233
Alignment:
Q  349 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgt 406  Q
    ||||||||||||||||||| | |||||| ||||||  |||| |||||| |||||||||    
T  14249290 aaacatataagtgagatgaccaatatacataatactttaaggttttgggtgatgatgt 14249233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 21568468 - 21568379
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcag 253  Q
    |||| ||||||||||||||||| ||||||| ||||| ||||||| |||| ||    | || ||| ||||||||||||| || ||||||||    
T  21568468 ataagtaagtatattgaaggacaaatatgagaatattaatgaagcattttaacatcatgggctattttgactaatgaattgcacaatcag 21568379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 37852953 - 37852904
Alignment:
Q  158 gtgacgataaataagtatattgaaggactaatatgacaatatcaatgaag 207  Q
    ||||| ||||||||||||||| || ||||||||||||| ||| |||||||    
T  37852953 gtgacaataaataagtatattaaaagactaatatgacattattaatgaag 37852904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 41898049 - 41897973
Alignment:
Q  122 tgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatat 199  Q
    |||||||| ||||||||| ||| ||||| | || ||||||| | |||||| |||||| || |||||||||||||||||    
T  41898049 tgattttgcactttgttaatcaaaatag-ctctaaagtgacaacaaataaatatattaaaagactaatatgacaatat 41897973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 14194862 - 14194910
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    |||| |||||||||| || |||| |||||||||||| ||||||||||||    
T  14194862 ataactaagtatattaaatgactgatatgacaatattaatgaagtattt 14194910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 39336722 - 39336770
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    |||| |||||||||||||||| ||||||| |||||| ||||||| ||||    
T  39336722 ataagtaagtatattgaaggattaatatgtcaatataaatgaagcattt 39336770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 53705888 - 53705944
Alignment:
Q  161 acgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 217  Q
    ||||||| |||||||||||||  |||||||||||||||| ||  |||||||| ||||    
T  53705888 acgataagtaagtatattgaataactaatatgacaatattaacaaagtattttaatg 53705944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 89 - 317
Target Start/End: Original strand, 21237203 - 21237431
Alignment:
Q  89 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 188  Q
    ||||||| ||||||||| |||||||||| ||| ||| |||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||| | ||||    
T  21237203 tctctcaatgtattaaaattctaaaatagtccctgagtttgtactttattagtcataatagtccctggagtgacaataactaagtatattgaacggctaa 21237302  T
Q  189 tatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactat 288  Q
    ||||||||| | |||||||||||| |||| |||| | |||||||||||| ||| | |||||||||||||||||||||||||| |||||||   |||||||    
T  21237303 tatgacaatgttaatgaagtattttaatgttaggaattaatttgactaacgaaatatacaatcagagacaatttaaaattttgatacattatgggactat 21237402  T
Q  289 cttagcctcacatgtatccaatgtctaga 317  Q
     ||| || |||||||||  ||||||||||    
T  21237403 tttaaccccacatgtatgaaatgtctaga 21237431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 89 - 327
Target Start/End: Original strand, 6524890 - 6525122
Alignment:
Q  89 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 188  Q
    ||||||| ||||||||| |||||||||| ||| ||||||||||||||||| ||     |||||  | ||||||  |||| ||| ||||||||||||||||    
T  6524890 tctctcaatgtattaaaattctaaaatagtccctgattttgtactttgtttgt-----tagtca-taaagtgagaataagtaaatatattgaaggactaa 6524983  T
Q  189 tatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactat 288  Q
    ||||||||||| |||||||||||| |||| || |||||| |||||| || |||||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  6524984 tatgacaatattaatgaagtattttaatgttacggactattttgacaaacgaagtgtataatcaaagacaatttaaaattttgatacattgatggactat 6525083  T
Q  289 cttagcctcacatgtatccaatgtctagatctgtccctg 327  Q
     |||| | |||||||||| |||||||||||||| |||||    
T  6525084 tttagtcccacatgtatcaaatgtctagatctgcccctg 6525122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 99 - 319
Target Start/End: Original strand, 26293425 - 26293648
Alignment:
Q  99 tattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaata 198  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| |||||    | ||||||| |||| || |||||||||| ||||||||||| ||||    
T  26293425 tattaaaattctaaaatagtccatgattttgtactttgttagtcaaaatagcatttaaagtgacaataagtatgtatattgaatgactaatatgataata 26293524  T
Q  199 tcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggac----tatcttagc 294  Q
    | ||  |||||||| |||| || |||||| |||||||||   | |||| ||| | | ||||||||||||||| ||||||||| | ||    ||| |||||    
T  26293525 ttaacaaagtattttaatgttaaggactattttgactaacagaatgta-aataaaaaacaatttaaaattttgatacattgaagaactatatattttagc 26293623  T
Q  295 ctcacatgtatccaatgtctagatc 319  Q
    | |||||||||| ||||||||||||    
T  26293624 cccacatgtatcaaatgtctagatc 26293648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 279
Target Start/End: Original strand, 9307403 - 9307518
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aattt 262  Q
    |||| ||||||||||||||||||||||||||||| | |||||| ||||| ||||  ||||||| ||||||| |||||| || ||| |||| ||| | |||    
T  9307403 ataagtaagtatattgaaggactaatatgacaatgttaatgaattattttaatgtcagggact-atttgacaaatgaaatgcacattcagggactatttt 9307501  T
Q  263 aaaattttaatacattg 279  Q
    ||||||| |||||||||    
T  9307502 aaaatttcaatacattg 9307518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 14549249 - 14549300
Alignment:
Q  229 tttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattga 280  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  14549249 tttgactaatgaagtgtacaatcagggagaatttgaaattttaatacattga 14549300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 280
Target Start/End: Original strand, 17848727 - 17848884
Alignment:
Q  124 attttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgataggg 223  Q
    |||||| | ||| ||||| | ||||||||| || ||||| |||| |||||||||  || |||||||||| |||||| || ||||||||| |||| ||  |    
T  17848727 attttgcattttattagtgaaaatagtcccagatgtgacaataagtaagtatatcaaatgactaatatgtcaatattaacgaagtattttaatgttaaag 17848826  T
Q  224 actaatttgactaatgaagtgtacaatcagagacaattt-aaaattttaatacattga 280  Q
    |||| ||||||||| ||| || |||||| || |  |||| |||||||| |||||||||    
T  17848827 actattttgactaacgaaatgcacaatctgaaattattttaaaattttgatacattga 17848884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 288
Target Start/End: Original strand, 20565728 - 20565836
Alignment:
Q  181 aggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattg 279  Q
    ||||||||||||| ||||| || ||| ||||| |||| || ||| || ||||||||  |||||| |||||||||||| | ||||||| ||  ||||||||    
T  20565728 aggactaatatgaaaatattaacgaaatattttaatgttatggattattttgactagcgaagtggacaatcagagactattttaaaaattcgatacattg 20565827  T
Q  280 atggactat 288  Q
    |||||||||    
T  20565828 atggactat 20565836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 16431591 - 16431665
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttga 233  Q
    |||| |||| ||||||||||||| ||||||||||||||||| | |||| ||||| |||| ||| ||||| |||||    
T  16431591 tgacaataagtaagtatattgaatgactaatatgacaatattagtgaattattttaatgttagagactattttga 16431665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 280
Target Start/End: Original strand, 10067660 - 10067777
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aattt 262  Q
    |||| ||||||||||||| ||||||||||||||||| ||  |||||||| ||||  || ||||| ||||| |||  || |  |||||||||||| | |||    
T  10067660 ataagtaagtatattgaatgactaatatgacaatattaacaaagtattttaatgtcagagactattttgattaacaaaatacacaatcagagactatttt 10067759  T
Q  263 aaaattttaatacattga 280  Q
    |||||||  |||||||||    
T  10067760 aaaatttcgatacattga 10067777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 21021035 - 21021106
Alignment:
Q  167 aataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaat 238  Q
    ||||||||||||||||||||||||||| ||||  || ||| ||||| |||| ||  ||||| ||||||||||    
T  21021035 aataagtatattgaaggactaatatgataataataacgaaatattttaatgttaatgactattttgactaat 21021106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 29927657 - 29927700
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaa 202  Q
    |||| |||||||||| |||||||| |||||||||||||||||||    
T  29927657 tgacaataaataagtttattgaagaactaatatgacaatatcaa 29927700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 25085014 - 25085112
Alignment:
Q  154 tgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatca 252  Q
    ||||||||  |||| ||||||||||||| || |||||||||||||| ||  || ||||| |||| ||  ||||| |||||||||  ||||| |||||||    
T  25085014 tgaagtgaaaataagtaagtatattgaaagaataatatgacaatattaacaaattattttaatgttaaagactattttgactaacaaagtgcacaatca 25085112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 12291646 - 12291695
Alignment:
Q  240 aagtgtacaatcagagacaattt-aaaattttaatacattgatggactat 288  Q
    ||||||||||||| |||| |||| |||||||||||||||||| |||||||    
T  12291646 aagtgtacaatcaaagactattttaaaattttaatacattgagggactat 12291695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 23887649 - 23887562
Alignment:
Q  173 tatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaattt 262  Q
    ||||||||||||||||||||||||||| |   || ||||| ||||| |||| ||| |||||||||  ||||| |||||||| ||||||||    
T  23887649 tatattgaaggactaatatgacaatattacacaattattttaatgacaggg-ctattttgactaacaaagtgcacaatcag-gacaattt 23887562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 31142088 - 31142035
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    |||| |||| ||| |||||||||| ||| |||||||||||| ||||||||||||    
T  31142088 tgacaataagtaaatatattgaagtactgatatgacaatattaatgaagtattt 31142035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 18130007 - 18129947
Alignment:
Q  173 tatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttga 233  Q
    ||||||||||||||||||||||||||| |   || ||||| ||||| |||||||| |||||    
T  18130007 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttga 18129947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 91 - 319
Target Start/End: Complemental strand, 17327 - 17102
Alignment:
Q  91 tctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaata 190  Q
    ||||| ||||||||| ||||||||||  || |||||||||||  |  |||||| ||| ||||||| |||||| ||||||||||||||||||  |||| ||    
T  17327 tctcaatgtattaaaattctaaaataggccctgattttgtaccat--tagtcaaaatggtccctgtagtgacaataaataagtatattgaaatactagta 17230  T
Q  191 tgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactatct 290  Q
    ||||||||| || ||||||||| |||| || |||||| ||||||||| |  ||||||||||| ||||||||||||||||| |||||||||  |||||| |    
T  17229 tgacaatattaacgaagtattttaatgttatggactattttgactaacgctgtgtacaatcaaagacaatttaaaattttgatacattgaaagactat-t 17131  T
Q  291 tagcctcacatgtatccaatgtctagatc 319  Q
    | ||| |||||||||| ||||||||||||    
T  17130 ttgccccacatgtatcaaatgtctagatc 17102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 89 - 324
Target Start/End: Original strand, 25689001 - 25689234
Alignment:
Q  89 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 188  Q
    ||||||| ||||||||| ||||||||||||   |||||||| ||||||||||| | |||||||||| || |||  |||| |||||||||| || |  |||    
T  25689001 tctctcaatgtattaaaattctaaaataatttctgattttgcactttgttagttaaaatagtcccttaaatgataataagtaagtatatttaatg--taa 25689098  T
Q  189 tatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaatttaaaattttaatacattgatggactat 288  Q
    ||||||||||| || ||||||||  |||| ||  || || ||||||||||| | |||| ||||||||| ||||||||||||||||| |||||    |||     
T  25689099 tatgacaatattaacgaagtattctaatgttaatgattattttgactaatggaatgtataatcagagataatttaaaattttaatatattgaaaatctac 25689198  T
Q  289 cttagcctcacatgtatccaatgtctagatctgtcc 324  Q
     ||| || |||||||||| |||||||||||| ||||    
T  25689199 tttaaccccacatgtatcaaatgtctagatccgtcc 25689234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 5197982 - 5198095
Alignment:
Q  124 attttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgataggg 223  Q
    |||||| ||||||||||||| ||||||||||||||  || |||||||||||||||||| ||||||||||||||||| |||||||||||| |||| ||| |    
T  5197982 attttgcactttgttagtcaaaatagtccctgaagcaacaataaataagtatattgaaagactaatatgacaatattaatgaagtattttaatgttagag 5198081  T
Q  224 actaatttgactaa 237  Q
    | || |||||||||    
T  5198082 attattttgactaa 5198095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 280
Target Start/End: Original strand, 8929505 - 8929689
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    ||||||||| || ||||||| |   |||||||| ||||||||||||| |||||||| | || ||||  |||||||||||| |||| ||||||| ||| ||    
T  8929505 tgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtccattaaatgacagtaaataagtatactgaatgactaatttgataa 8929604  T
Q  197 tatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattga 280  Q
    ||| || ||||||||  |||| || ||| || ||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||    
T  8929605 tattaacgaagtattctaatgttaaggattattttgactaacgaaatgtacaatctgagacaaatttaaaattttaatacattga 8929689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 32996404 - 32996306
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaattt 262  Q
    |||||||||||||||||||||||||||||||||||| ||  || || || |||  ||| ||||| ||| || |||||||||||||||||||||| ||||    
T  32996404 ataaataagtatattgaaggactaatatgacaatattaacaaattaatttaatattagagactattttaacaaatgaagtgtacaatcagagactattt 32996306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 280
Target Start/End: Complemental strand, 18942962 - 18942787
Alignment:
Q  107 ttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaa 206  Q
    |||||||||| ||  |||||||| | ||| ||| ||| |||| ||| |||| |||| |||| ||||||||||||| || |||||||||||||| || ||     
T  18942962 ttctaaaatagtctctgattttgcattttattaatcaaaataatccatgaaatgacaataagtaagtatattgaatgattaatatgacaatattaacgac 18942863  T
Q  207 gtatttgaatgatagggactaatttgactaatgaagtgtaca--atcagagacaatttaaaattttaatacattga 280  Q
    |||||| |||| ||| ||||| || |||||| ||| || |||  |||| ||| | ||||||||||| |||||||||    
T  18942862 gtattttaatgttagagactatttggactaacgaaatgcacatgatcaaagatattttaaaattttgatacattga 18942787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 5362411 - 5362338
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaa 237  Q
    ||||||||||||||||||||||||||||||| |||| || ||||||||| |||   |||||||| |||||||||    
T  5362411 ataaataagtatattgaaggactaatatgaccatattaacgaagtattttaatatcagggactattttgactaa 5362338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 288
Target Start/End: Complemental strand, 34703795 - 34703671
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagacaattta 263  Q
    |||| |||||||| |||| |||||||||||||||||  |  || ||||| || | ||| ||||| |||||  || |||||| ||||| |||||| ||||     
T  34703795 ataagtaagtatactgaaagactaatatgacaatattgacaaaatattttaaagttagagactattttgatcaacgaagtgaacaattagagactatttt 34703696  T
Q  264 aaattttaatacattgatggactat 288  Q
    ||| ||| |||||||||||||||||    
T  34703695 aaaatttgatacattgatggactat 34703671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 1344509 - 1344462
Alignment:
Q  165 taaataagtatattgaaggactaatatgacaatatcaatgaagtattt 212  Q
    |||||||||||||||||||||| || ||||||||| ||||||||||||    
T  1344509 taaataagtatattgaaggactgatgtgacaatattaatgaagtattt 1344462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 3116962 - 3116911
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaa 215  Q
    |||| ||||||||||||| ||||||||||||||||| |||||| ||||||||    
T  3116962 ataagtaagtatattgaaagactaatatgacaatattaatgaaatatttgaa 3116911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 30839940 - 30839838
Alignment:
Q  110 taaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagta 209  Q
    ||||||| ||| |||||||  | ||| ||||| | ||||||| || || |||  ||||||||||||| |||||||||||||||||||| | || ||||||    
T  30839940 taaaatagtccctgattttaaattttattagttaaaatagtctctaaaatgataataaataagtatactgaaggactaatatgacaatgttaacgaagta 30839841  T
Q  210 ttt 212  Q
    |||    
T  30839840 ttt 30839838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 280
Target Start/End: Original strand, 40077598 - 40077720
Alignment:
Q  158 gtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac 257  Q
    |||||||||||||| |||||||||| |||||||| ||||||| ||  || ||||| |||| ||| ||||| ||| | |||| || | |||||| ||| |     
T  40077598 gtgacgataaataaatatattgaagtactaatataacaatattaacaaaatattttaatgttagagactattttaattaataaaatatacaattagatat 40077697  T
Q  258 aatttaaaattttaatacattga 280  Q
     |||| ||| |||||||||||||    
T  40077698 tattttaaaatttaatacattga 40077720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 288
Target Start/End: Complemental strand, 38838698 - 38838508
Alignment:
Q  97 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 196  Q
    ||||||||| || ||||||| ||  |||||||| | ||||||||||| ||||| |||||||| ||| |    |||||||||| || |||||| |||| ||    
T  38838698 tgtattaaaattttaaaatagtctctgattttgcattttgttagtcaaaatag-ccctgaagagacaactggtaagtatattaaaagactaacatgataa 38838600  T
Q  197 tatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagac-aatttaaaattttaatacattgatggactat 288  Q
    ||| ||  || ||||| |||  ||||||||| ||||||||   ||||| |||||||  ||| | ||||||||||||| |||| ||||||||||    
T  38838599 tattaacaaattattttaatattagggactattttgactagaaaagtgcacaatcaaggactattttaaaattttaa-acatcgatggactat 38838508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 262
Target Start/End: Original strand, 40355004 - 40355107
Alignment:
Q  159 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaatgaagtgtacaatcagagaca 258  Q
    |||| |||| || |||||| |||| |||||||||||||||| |||||||| ||| ||||  |  ||||| |||||||||   |||| ||||||||||||     
T  40355004 tgacaataagtatgtatatagaagaactaatatgacaatattaatgaagtgttttaatgtaaatgactattttgactaacatagtgcacaatcagagact 40355103  T
Q  259 attt 262  Q
    ||||    
T  40355104 attt 40355107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 382
Target Start/End: Original strand, 2929478 - 2929532
Alignment:
Q  328 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaata 382  Q
    |||| ||||||| ||||||||||||||||| ||||||||| | | ||||||||||    
T  2929478 gatgtaaaagtagatgttaagaaacatatatgtgagatgaccaagatacctaata 2929532  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 8062868 - 8062786
Alignment:
Q  154 tgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgacta 236  Q
    ||||||||| || | |||||||||| || ||||||||||||||||| ||  || ||||| |||| || |||||| ||||||||    
T  8062868 tgaagtgacaatgagtaagtatattaaaagactaatatgacaatattaacaaattattttaatgttatggactattttgacta 8062786  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 39608482 - 39608429
Alignment:
Q  164 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 217  Q
    |||| |||||||| |||| ||||||||||||||||| ||| |||||||| ||||    
T  39608482 ataagtaagtatactgaatgactaatatgacaatattaatcaagtattttaatg 39608429  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 30839788 - 30839724
Alignment:
Q  255 gacaatttaaaattttaatacattgatggactatcttagcctcacatgtatccaatgtctagatc 319  Q
    ||||||| |||||| | ||||||| | ||||||| |||||| || ||||||| ||||||||||||    
T  30839788 gacaattaaaaattctgatacattaagggactattttagccccaaatgtatcaaatgtctagatc 30839724  T

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Target: scaffold0216 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 29209 - 29157
Alignment:
Q  326 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 378  Q
    |||||||||||||| |||||||  |||||||||||||||||||| ||||||||    
T  29209 tggatgcaaaagtagatgttaaacaacatataagtgagatgatcaatatacct 29157  T

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Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 20699 - 20628
Alignment:
Q  167 aataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaatttgactaat 238  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||||| ||| | |  ||||| ||||||||||    
T  20699 aataagtctattgaaggactaatatgacaatattaatgaaatattttaataacaatgactattttgactaat 20628  T

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Target: scaffold0191 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 11645 - 11702
Alignment:
Q  349 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgt 406  Q
    ||||||||||||||||||||| |||||| ||||||  |||| |||||| |||||||||    
T  11645 aaacatataagtgagatgatcaatatacataatactttaaggttttgggtgatgatgt 11702  T

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Target: scaffold0074 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 32751 - 32801
Alignment:
Q  328 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 378  Q
    ||||||| || | |||||||||||||||||||||||||||  |||||||||    
T  32751 gatgcaagagcatatgttaagaaacatataagtgagatgactgatatacct 32801  T

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