View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3978_high_1 (Length: 761)

Name: NF3978_high_1
Description: NF3978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3978_high_1
NF3978_high_1
[»] chr8 (8 HSPs)
chr8 (250-449)||(1086199-1086398)
chr8 (14-186)||(1085963-1086135)
chr8 (535-664)||(1086485-1086614)
chr8 (588-664)||(31386895-31386971)
chr8 (700-742)||(7996969-7997011)
chr8 (695-741)||(12800885-12800931)
chr8 (694-735)||(1644657-1644698)
chr8 (701-742)||(27571840-27571881)
[»] chr3 (12 HSPs)
chr3 (14-186)||(24996718-24996889)
chr3 (251-448)||(11427871-11428065)
chr3 (333-449)||(24996498-24996615)
chr3 (70-186)||(11428130-11428245)
chr3 (600-650)||(52470197-52470248)
chr3 (692-742)||(45334218-45334268)
chr3 (588-662)||(13822989-13823064)
chr3 (694-742)||(25727951-25727999)
chr3 (694-742)||(55066584-55066632)
chr3 (606-664)||(4264446-4264503)
chr3 (694-735)||(52575983-52576024)
chr3 (694-735)||(53365940-53365981)
[»] chr6 (10 HSPs)
chr6 (664-742)||(27834368-27834446)
chr6 (264-449)||(22892804-22892991)
chr6 (36-186)||(22893142-22893292)
chr6 (250-327)||(26531543-26531620)
chr6 (692-742)||(10496954-10497003)
chr6 (700-742)||(4455586-4455628)
chr6 (700-742)||(9977086-9977128)
chr6 (697-734)||(16204777-16204814)
chr6 (694-735)||(17935765-17935806)
chr6 (694-735)||(27907935-27907976)
[»] chr2 (8 HSPs)
chr2 (288-449)||(193924-194087)
chr2 (36-186)||(194260-194410)
chr2 (600-650)||(7739217-7739268)
chr2 (694-742)||(23407002-23407050)
chr2 (694-742)||(24592830-24592878)
chr2 (694-741)||(25625746-25625793)
chr2 (696-742)||(29896280-29896326)
chr2 (606-650)||(36200871-36200916)
[»] scaffold1135 (2 HSPs)
scaffold1135 (264-449)||(2162-2349)
scaffold1135 (36-186)||(2500-2650)
[»] scaffold0054 (2 HSPs)
scaffold0054 (264-449)||(2012-2199)
scaffold0054 (36-186)||(2350-2500)
[»] chr1 (9 HSPs)
chr1 (606-664)||(17224160-17224217)
chr1 (606-664)||(25871698-25871755)
chr1 (696-742)||(10356701-10356746)
chr1 (606-664)||(19151991-19152048)
chr1 (606-664)||(23679050-23679107)
chr1 (700-742)||(28832161-28832203)
chr1 (694-747)||(3481585-3481638)
chr1 (694-735)||(17031841-17031882)
chr1 (694-735)||(52434627-52434668)
[»] chr4 (7 HSPs)
chr4 (606-664)||(14056244-14056301)
chr4 (694-742)||(17729455-17729503)
chr4 (694-742)||(56497592-56497640)
chr4 (606-664)||(55039339-55039396)
chr4 (696-742)||(55061066-55061112)
chr4 (694-735)||(9946463-9946504)
chr4 (693-742)||(22630343-22630392)
[»] chr7 (10 HSPs)
chr7 (36-96)||(19534148-19534208)
chr7 (588-651)||(12103205-12103269)
chr7 (694-742)||(5579722-5579770)
chr7 (689-736)||(21327520-21327567)
chr7 (694-736)||(145553-145595)
chr7 (695-741)||(7994869-7994915)
chr7 (606-664)||(41546041-41546098)
chr7 (697-742)||(3671853-3671898)
chr7 (694-735)||(10026030-10026071)
chr7 (694-735)||(12823249-12823290)
[»] chr5 (3 HSPs)
chr5 (694-742)||(6489036-6489084)
chr5 (694-742)||(15889440-15889488)
chr5 (694-742)||(24408524-24408572)
[»] scaffold0111 (1 HSPs)
scaffold0111 (694-735)||(39420-39461)
[»] scaffold0050 (1 HSPs)
scaffold0050 (694-735)||(53364-53405)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-101; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 250 - 449
Target Start/End: Original strand, 1086199 - 1086398
Alignment:
Q  250 cacaagatggaaagagtgaattgaacaacaagaacatggatgaatatacctgcgttgaagatgaaagagggagaaaacgagagaacaagctagggattcc 349  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1086199 cacaaaatggaaagagtgaattgaacaacaagaacatggatgaatatacctgcgttgaagattaaagagggagaaaacgagagaacaagctagggattcc 1086298  T
Q  350 aatcgcggagaaatcgacaacgatgacaaggatgtgggaggagatcgacctttcgagaaatccatcaagacgtaacgacgacggcgtcaaagagaatggt 449  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1086299 aatcgtggagaaatcgacaacgatgacaaggatgtgggaggagatcgacctttcgagaaatccatcaagacgtaacgacgacggcgtcaaagagaatggt 1086398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 1085963 - 1086135
Alignment:
Q  14 catcaaacgcaagcaaacactgacatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatatagttctnnnnnnntcaa 113  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  1085963 catcaaacgcaagcaaacaccgacatcaaatttaacccaccattaacttcacatcttcaatattttagctaaattgcatatatagttctaaaaaaatcaa 1086062  T
Q  114 tttattccatatcagtattctgaattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 186  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1086063 tttattccatatcagtattctaaattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 1086135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 535 - 664
Target Start/End: Original strand, 1086485 - 1086614
Alignment:
Q  535 ggtatgacatggattatgccaannnnnnnnattaattatgccacacaagggtgttttttattattaatttatgccacacaaaggtggtatatggtggtat 634  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1086485 ggtatgacatggattatgccaattttttttattaattatgccacacaagggtgttttttattattaatttatgccacacaaaggtggtatatggtggtat 1086584  T
Q  635 tgccacctatggtggtacacttatcactgc 664  Q
    ||||||||||||||||||||||||||||||    
T  1086585 tgccacctatggtggtacacttatcactgc 1086614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 588 - 664
Target Start/End: Complemental strand, 31386971 - 31386895
Alignment:
Q  588 ttttttattattaattt-atgccacacaaaggtggtatatggtggtattgccacctatggtggtacacttatcactgc 664  Q
    ||||||||||||||||| |||||||| ||  |||||||| |||| | ||||||||||||||||||||| |||||||||    
T  31386971 ttttttattattaattttatgccacataagagtggtataaggtg-tgttgccacctatggtggtacacctatcactgc 31386895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 742
Target Start/End: Complemental strand, 7997011 - 7996969
Alignment:
Q  700 gtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||| || |||||||||||||||||||||||| |||||    
T  7997011 gtggtggtcggggtttgaaccccagaccttgcatatattatgc 7996969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 695 - 741
Target Start/End: Original strand, 12800885 - 12800931
Alignment:
Q  695 ttttggtggtggtccggatttgaaccccagaccttgcatatagtatg 741  Q
    |||||||||||||| || |||||||||| ||||||||||||| ||||    
T  12800885 ttttggtggtggtcggggtttgaaccccggaccttgcatatattatg 12800931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 735
Target Start/End: Original strand, 1644657 - 1644698
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatat 735  Q
    ||||||||||||||| ||||||||| |||||||||| |||||    
T  1644657 tttttggtggtggtcaggatttgaatcccagaccttacatat 1644698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 742
Target Start/End: Original strand, 27571840 - 27571881
Alignment:
Q  701 tggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    |||||||| |||||||||||||| |||||||||||| |||||    
T  27571840 tggtggtcgggatttgaaccccaaaccttgcatatattatgc 27571881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 4e-65; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 24996889 - 24996718
Alignment:
Q  14 catcaaacgcaagcaaacactgacatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatatagttctnnnnnnntcaa 113  Q
    ||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||       ||||    
T  24996889 catcaaacgcaagcaaacacttacatcaaatttcacccaccattaacttcacatcttcaatattttagctaaattacatatatagttctaaaaaa-tcaa 24996791  T
Q  114 tttattccatatcagtattctgaattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24996790 tttattccatatcagtattctgaattaaccaaattgtgatttacaattttcacaaaaaggattaaatttaatt 24996718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 251 - 448
Target Start/End: Complemental strand, 11428065 - 11427871
Alignment:
Q  251 acaagatggaaagagtgaattgaacaacaagaacatggatgaatatacctgcgttgaagatgaaagagggagaaaacgaga-gaacaagctagggattcc 349  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||||||||||||||||    
T  11428065 acaagatggaacgagtgaatcgaacaaaaagaacatggatgaatatacatgcattgaagatg-aagagggagaaaacgagaggaacaagctagggattcc 11427967  T
Q  350 -aatcgcggagaaatcgacaacgatgacaaggatgtgggaggagatcgacctttcgagaaatccatcaagacgtaacgacgacggcgtcaaagagaatgg 448  Q
     |||| |||||||||||    ||||| ||||||||||||||||||||||||||| | ||||||||||||    ||||||||| || ||| ||||||||||    
T  11427966 taatcacggagaaatcggaggcgatggcaaggatgtgggaggagatcgaccttttgggaaatccatcaa----taacgacgatggtgtcgaagagaatgg 11427871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 24996615 - 24996498
Alignment:
Q  333 aacaagctagggattcc-aatcgcggagaaatcgacaacgatgacaaggatgtgggaggagatcgacctttcgagaaatccatcaagacgtaacgacgac 431  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  24996615 aacaagctagggattcctaatcgcggagaaatcgacaacgatgacaaggatgtgggaggagatcgacctttcaagaaatccatcaagacgtaacggcgac 24996516  T
Q  432 ggcgtcaaagagaatggt 449  Q
    | ||| ||||||||||||    
T  24996515 gacgtgaaagagaatggt 24996498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 11428245 - 11428130
Alignment:
Q  70 tcaatattttagctaaattgcatatatagttctnnnnnnntcaatttattccatatcagtattctgaattaaccaaattgtgatttacaattttcacaaa 169  Q
    |||||||||||||||||||||||||||||||||       | | ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  11428245 tcaatattttagctaaattgcatatatagttctaaaaaa-taagtttattccatatcagtattatgaattaaccaaattgagatttacaattttcacaaa 11428147  T
Q  170 aaggtttaaatttaatt 186  Q
    || ||||||||||||||    
T  11428146 aatgtttaaatttaatt 11428130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 600 - 650
Target Start/End: Complemental strand, 52470248 - 52470197
Alignment:
Q  600 aatttatgccacacaaaggtggtatat-ggtggtattgccacctatggtggt 650  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  52470248 aatttttgccacacaaaggtggtatatgggtgggattgccacctatggtggt 52470197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 692 - 742
Target Start/End: Complemental strand, 45334268 - 45334218
Alignment:
Q  692 tatttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||||||||||| |||||||||||||  |||||||||||| |||||    
T  45334268 tatttttggtggtggtcgggatttgaaccccgaaccttgcatatattatgc 45334218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 588 - 662
Target Start/End: Original strand, 13822989 - 13823064
Alignment:
Q  588 ttttttattattaatt-tat-gccacacaaaggtggtatatggtggtattgccacctatggtggtacacttatcact 662  Q
    |||||||||||||||| ||| |||||| || ||||||||| |||| |||||||||||||||||||| || |||||||    
T  13822989 ttttttattattaattgtattgccacataagggtggtataaggtg-tattgccacctatggtggtatacctatcact 13823064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 694 - 742
Target Start/End: Original strand, 25727951 - 25727999
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    |||| |||||||||| ||||||||||||| ||||||||||||| |||||    
T  25727951 ttttgggtggtggtcgggatttgaaccccggaccttgcatatattatgc 25727999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 694 - 742
Target Start/End: Original strand, 55066584 - 55066632
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||||||| | |||||||||||||||||| |||||||| |||||    
T  55066584 tttttggtggtggccgggatttgaaccccagaccatgcatatattatgc 55066632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 606 - 664
Target Start/End: Complemental strand, 4264503 - 4264446
Alignment:
Q  606 tgccacacaaaggtggtatatggtggtattgccacctatggtggtacacttatcactgc 664  Q
    ||||||| || ||||||||| |||| || |||||||||||||||||||| |||||||||    
T  4264503 tgccacataagggtggtataaggtg-tagtgccacctatggtggtacacctatcactgc 4264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 735
Target Start/End: Complemental strand, 52576024 - 52575983
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatat 735  Q
    |||| |||||||||| ||||| ||||||||||||||||||||    
T  52576024 ttttcggtggtggtcgggattcgaaccccagaccttgcatat 52575983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 735
Target Start/End: Complemental strand, 53365981 - 53365940
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatat 735  Q
    ||||||||||||| | ||||||||||||| ||||||||||||    
T  53365981 tttttggtggtggccgggatttgaaccccggaccttgcatat 53365940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 6e-27; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 664 - 742
Target Start/End: Complemental strand, 27834446 - 27834368
Alignment:
Q  664 caactgttaaaacttaaattattatatctatttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  27834446 caactgttaaaacttaaattattatatctttttttcgtggtggtccgggtttgaaccccagaccttgcatatattatgc 27834368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 264 - 449
Target Start/End: Complemental strand, 22892991 - 22892804
Alignment:
Q  264 agtgaattgaacaacaagaacatggatgaatatacctgcgttgaagatgaaagagggagaaaacgagag-aacaagctagggattcca-atcgcggagaa 361  Q
    ||||||| |||||| |||| ||  |||||||||||||| |||||||||| |||||| |||||||  ||| |||||  ||||||||||  | | | || ||    
T  22892991 agtgaatcgaacaaaaagaccagagatgaatatacctgagttgaagatggaagaggaagaaaacaggaggaacaaaatagggattcctgagcacagaaaa 22892892  T
Q  362 atcgacaacgatgacaaggatgtgggaggagatcgacctttcgagaaatccatcaagacgtaacgacgacggcgtcaaagagaatggt 449  Q
    |||||||  ||  ||||||||||||  ||||||| ||||| ||| ||||| ||||||| |||||| ||||||| |||| |||||||||    
T  22892891 atcgacagtgacaacaaggatgtggttggagatcaaccttccgaaaaatctatcaagatgtaacggcgacggcatcaacgagaatggt 22892804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 22893292 - 22893142
Alignment:
Q  36 acatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatatagttctnnnnnnntcaatt--tattccatatcagtattc 133  Q
    ||||||||||  ||||| |||||||| |||||||||||||| ||||||||| ||||||||| ||||        ||| ||  ||| |||| | |||| ||    
T  22893292 acatcaaattccacccatgattaactacacatcttcaatatcttagctaaagtgcatatatggttc-aaaaaaatcactttatatcccatcttagtactc 22893194  T
Q  134 tgaattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 186  Q
    || ||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  22893193 tggattaaccaaattgaga-ttacaattttcacaaaaatgtttaaatttaatt 22893142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 26531543 - 26531620
Alignment:
Q  250 cacaagatggaaagagtgaattgaacaacaagaacatggatgaatatacctgcgttgaagatgaaagagggagaaaac 327  Q
    ||||||||||||  |||||||||||||| | || ||  |||| ||||||||| |||||||||| ||||||||||||||    
T  26531543 cacaagatggaacaagtgaattgaacaaaatgaccagcgatgcatatacctgagttgaagatggaagagggagaaaac 26531620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 692 - 742
Target Start/End: Original strand, 10496954 - 10497003
Alignment:
Q  692 tatttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||| |||||||| |||||||||||||||||||||||||||||| |||||    
T  10496954 tatttctggtggtg-tccggatttgaaccccagaccttgcatatattatgc 10497003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 742
Target Start/End: Original strand, 4455586 - 4455628
Alignment:
Q  700 gtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||| || |||||||||||||||||||||||| |||||    
T  4455586 gtggtggtcggggtttgaaccccagaccttgcatatattatgc 4455628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 742
Target Start/End: Complemental strand, 9977128 - 9977086
Alignment:
Q  700 gtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||| || |||||||||||||||||||||||| |||||    
T  9977128 gtggtggtcagggtttgaaccccagaccttgcatatattatgc 9977086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 734
Target Start/End: Original strand, 16204777 - 16204814
Alignment:
Q  697 ttggtggtggtccggatttgaaccccagaccttgcata 734  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  16204777 ttggtggtggtcgggatttgaaccccggaccttgcata 16204814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 735
Target Start/End: Complemental strand, 17935806 - 17935765
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatat 735  Q
    ||||| ||||||||| |||||||||||| |||||||||||||    
T  17935806 ttttttgtggtggtcgggatttgaaccctagaccttgcatat 17935765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 735
Target Start/End: Original strand, 27907935 - 27907976
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatat 735  Q
    ||||||||||||| | || |||||||||||||||||||||||    
T  27907935 tttttggtggtggccggggtttgaaccccagaccttgcatat 27907976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 8e-23; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 288 - 449
Target Start/End: Complemental strand, 194087 - 193924
Alignment:
Q  288 gatgaatatacctgcgttgaagatgaaagagggagaaaacgagag-aacaagctagggattcca-atcgcggagaaatcgacaacgatgacaaggatgtg 385  Q
    |||||||||||||| |||||||||| ||||||||||||||  ||| |||||  ||||||||||  | | | |||||||||||| |||| |||||||||||    
T  194087 gatgaatatacctgagttgaagatggaagagggagaaaacaggaggaacaaagtagggattcctgagcacagagaaatcgacagcgataacaaggatgtg 193988  T
Q  386 ggaggagatcgacctttcgagaaatccatcaagacgtaacgacgacggcgtcaaagagaatggt 449  Q
       ||||||| ||||| ||| ||||| ||||||| |||||||||||||| |||  |||||||||    
T  193987 attggagatcaaccttccgaaaaatctatcaagatgtaacgacgacggcatcagcgagaatggt 193924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 194410 - 194260
Alignment:
Q  36 acatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatatagttctnnnnnnntcaatt--tattccatatcagtattc 133  Q
    ||||||||||  |||||| ||||||| |||||||||||||| ||||||||| ||||||||| ||||        ||| ||  |||||||||| |||| |     
T  194410 acatcaaattccacccacaattaactacacatcttcaatatcttagctaaagtgcatatatggttc-aaaaaaatcactttatattccatattagtactg 194312  T
Q  134 tgaattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 186  Q
    || ||||||||||||| || ||| |||||||||||||| ||||||||||||||    
T  194311 tggattaaccaaattgaga-ttaaaattttcacaaaaatgtttaaatttaatt 194260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 600 - 650
Target Start/End: Complemental strand, 7739268 - 7739217
Alignment:
Q  600 aatttatgccacacaaaggtggtatatgg-tggtattgccacctatggtggt 650  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||||||||||    
T  7739268 aatttttgccacacaagggtggtatatgggtggtattgccacctatggtggt 7739217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 694 - 742
Target Start/End: Original strand, 23407002 - 23407050
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||| ||||||||| || |||||||||||||||||||||||| |||||    
T  23407002 tttttcgtggtggtcagggtttgaaccccagaccttgcatatattatgc 23407050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 694 - 742
Target Start/End: Original strand, 24592830 - 24592878
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||||||| | || |||||||||||||||||||||||| |||||    
T  24592830 tttttggtggtggccggggtttgaaccccagaccttgcatatattatgc 24592878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 741
Target Start/End: Complemental strand, 25625793 - 25625746
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatatagtatg 741  Q
    |||||||||||||||||| |||||||||| |||||| |||||| ||||    
T  25625793 tttttggtggtggtccgggtttgaaccccggaccttacatatattatg 25625746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 696 - 742
Target Start/End: Original strand, 29896280 - 29896326
Alignment:
Q  696 tttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||||||| || ||||||||||| |||||||||||| |||||    
T  29896280 tttggtggtggtcggggtttgaaccccaaaccttgcatatattatgc 29896326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 650
Target Start/End: Original strand, 36200871 - 36200916
Alignment:
Q  606 tgccacacaaaggtggtatatgg-tggtattgccacctatggtggt 650  Q
    |||||||||| |||||||||||| ||| ||||||||||||||||||    
T  36200871 tgccacacaagggtggtatatgggtgggattgccacctatggtggt 36200916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1135 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold1135
Description:

Target: scaffold1135; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 264 - 449
Target Start/End: Complemental strand, 2349 - 2162
Alignment:
Q  264 agtgaattgaacaacaagaacatggatgaatatacctgcgttgaagatgaaagagggagaaaacgagag-aacaagctagggattcca-atcgcggagaa 361  Q
    ||||||| |||||| |||| ||  |||||||||||||  |||||||||| ||||||||||||||  ||| |||||  ||||||||||  | | | || ||    
T  2349 agtgaatcgaacaaaaagaccagagatgaatataccttagttgaagatggaagagggagaaaacaggaggaacaaaatagggattcctgagcacagaaaa 2250  T
Q  362 atcgacaacgatgacaaggatgtgggaggagatcgacctttcgagaaatccatcaagacgtaacgacgacggcgtcaaagagaatggt 449  Q
    ||||||| |||  ||||||||||||  ||||||| ||||| ||| ||||| ||||||| |||||| ||||||| |||| |||||||||    
T  2249 atcgacagcgacaacaaggatgtggttggagatcaaccttccgaaaaatctatcaagatgtaacggcgacggcatcaacgagaatggt 2162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1135; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 2650 - 2500
Alignment:
Q  36 acatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatatagttctnnnnnnntcaatt--tattccatatcagtattc 133  Q
    ||||||||||  ||||| |||||||| |||||||||||||| ||||||||| ||||||||| ||||        ||| ||  ||| |||| | |||| ||    
T  2650 acatcaaattccacccatgattaactacacatcttcaatatcttagctaaagtgcatatatggttc-aaaaaaatcactttatatcccatcttagtactc 2552  T
Q  134 tgaattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 186  Q
    || ||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  2551 tggattaaccaaattgaga-ttacaattttcacaaaaatgtttaaatttaatt 2500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 264 - 449
Target Start/End: Complemental strand, 2199 - 2012
Alignment:
Q  264 agtgaattgaacaacaagaacatggatgaatatacctgcgttgaagatgaaagagggagaaaacgagag-aacaagctagggattcca-atcgcggagaa 361  Q
    ||||||| |||||| |||| ||  |||||||||||||  |||||||||| ||||||||||||||  ||| |||||  ||||||||||  | | | || ||    
T  2199 agtgaatcgaacaaaaagaccagagatgaatataccttagttgaagatggaagagggagaaaacaggaggaacaaaatagggattcctgagcacagaaaa 2100  T
Q  362 atcgacaacgatgacaaggatgtgggaggagatcgacctttcgagaaatccatcaagacgtaacgacgacggcgtcaaagagaatggt 449  Q
    ||||||| |||  ||||||||||||  ||||||| ||||| ||| ||||| ||||||| |||||| ||||||| |||  |||||||||    
T  2099 atcgacagcgacaacaaggatgtggttggagatcaaccttccgaaaaatctatcaagatgtaacggcgacggcatcagcgagaatggt 2012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 2500 - 2350
Alignment:
Q  36 acatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatatagttctnnnnnnntcaatt--tattccatatcagtattc 133  Q
    ||||||||||  ||||| |||||||| |||||||||||||| ||||||||| ||||||||| ||||        ||| ||  ||| |||| | |||| ||    
T  2500 acatcaaattccacccatgattaactacacatcttcaatatcttagctaaagtgcatatatggttc-aaaaaaatcactttatatcccatcttagtactc 2402  T
Q  134 tgaattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 186  Q
    || ||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  2401 tggattaaccaaattgaga-ttacaattttcacaaaaatgtttaaatttaatt 2350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 606 - 664
Target Start/End: Complemental strand, 17224217 - 17224160
Alignment:
Q  606 tgccacacaaaggtggtatatggtggtattgccacctatggtggtacacttatcactgc 664  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||    
T  17224217 tgccacacaaaggtggtataaggtg-tattgccacctatggtggtacacctatcactgc 17224160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 664
Target Start/End: Complemental strand, 25871755 - 25871698
Alignment:
Q  606 tgccacacaaaggtggtatatggtggtattgccacctatggtggtacacttatcactgc 664  Q
    ||||||| || ||||||||| |||| ||||||||||||||||||||||| |||||||||    
T  25871755 tgccacaaaagggtggtataaggtg-tattgccacctatggtggtacacctatcactgc 25871698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 696 - 742
Target Start/End: Original strand, 10356701 - 10356746
Alignment:
Q  696 tttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||||||| || |||||||||||||||||||||||| |||||    
T  10356701 tttggtggtggtcggg-tttgaaccccagaccttgcatatattatgc 10356746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 606 - 664
Target Start/End: Original strand, 19151991 - 19152048
Alignment:
Q  606 tgccacacaaaggtggtatatggtggtattgccacctatggtggtacacttatcactgc 664  Q
    ||||||| || ||||||||| |||| || |||||||||||||||||||| |||||||||    
T  19151991 tgccacataagggtggtataaggtg-tagtgccacctatggtggtacacctatcactgc 19152048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 606 - 664
Target Start/End: Original strand, 23679050 - 23679107
Alignment:
Q  606 tgccacacaaaggtggtatatggtggtattgccacctatggtggtacacttatcactgc 664  Q
    ||||||| || ||||||||| |||| || |||||||||||||||||||| |||||||||    
T  23679050 tgccacataagggtggtataaggtg-tagtgccacctatggtggtacacctatcactgc 23679107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 742
Target Start/End: Original strand, 28832161 - 28832203
Alignment:
Q  700 gtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||| ||||||||||| ||||||||||||||| |||||    
T  28832161 gtggtggtcgggatttgaacctcagaccttgcatatattatgc 28832203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 747
Target Start/End: Complemental strand, 3481638 - 3481585
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatatagtatgcttttg 747  Q
    |||| |||||||| | || |||||||||||||||||||||||| ||||| ||||    
T  3481638 ttttgggtggtggccggggtttgaaccccagaccttgcatatattatgcatttg 3481585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 735
Target Start/End: Original strand, 17031841 - 17031882
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatat 735  Q
    ||||||||||||||| |||||||||||| | |||||||||||    
T  17031841 tttttggtggtggtcgggatttgaaccctaaaccttgcatat 17031882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 735
Target Start/End: Complemental strand, 52434668 - 52434627
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatat 735  Q
    ||||| ||||||||| | ||||||||||||||||||||||||    
T  52434668 ttttttgtggtggtcagaatttgaaccccagaccttgcatat 52434627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 606 - 664
Target Start/End: Original strand, 14056244 - 14056301
Alignment:
Q  606 tgccacacaaaggtggtatatggtggtattgccacctatggtggtacacttatcactgc 664  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||||    
T  14056244 tgccacacaagggtggtataaggtg-tattgccacctatggtggtacacctatcactgc 14056301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 694 - 742
Target Start/End: Complemental strand, 17729503 - 17729455
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||| ||||||||| || |||||||||||||||||||||||| |||||    
T  17729503 ttttttgtggtggtcggggtttgaaccccagaccttgcatatattatgc 17729455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 694 - 742
Target Start/End: Original strand, 56497592 - 56497640
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||||||| | ||||| ||||||||||||||||||||| |||||    
T  56497592 tttttggtggtggccgggattcgaaccccagaccttgcatatattatgc 56497640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 606 - 664
Target Start/End: Complemental strand, 55039396 - 55039339
Alignment:
Q  606 tgccacacaaaggtggtatatggtggtattgccacctatggtggtacacttatcactgc 664  Q
    ||||||| || ||||||||| |||| || |||||||||||||||||||| |||||||||    
T  55039396 tgccacataagggtggtataaggtg-tagtgccacctatggtggtacacctatcactgc 55039339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 696 - 742
Target Start/End: Complemental strand, 55061112 - 55061066
Alignment:
Q  696 tttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||||||| | ||||||||||| ||||||||||||| |||||    
T  55061112 tttggtggtggtcggaatttgaacccccgaccttgcatatattatgc 55061066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 735
Target Start/End: Complemental strand, 9946504 - 9946463
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatat 735  Q
    ||||||||||||||| || |||||||||| ||||||||||||    
T  9946504 tttttggtggtggtcggggtttgaaccccggaccttgcatat 9946463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 742
Target Start/End: Original strand, 22630343 - 22630392
Alignment:
Q  693 atttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||| |||||||| || |||||||| ||||||||||||||| |||||    
T  22630343 atttttgatggtggtcggggtttgaacctcagaccttgcatatattatgc 22630392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 19534208 - 19534148
Alignment:
Q  36 acatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatat 96  Q
    ||||||||||  |||||| |||||||||||||||||||||| ||||| ||| |||||||||    
T  19534208 acatcaaattccacccacaattaacttcacatcttcaatatcttagccaaagtgcatatat 19534148  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 651
Target Start/End: Complemental strand, 12103269 - 12103205
Alignment:
Q  588 ttttttattattaatt-tat-gccacacaaaggtggtatatggtggtattgccacctatggtggta 651  Q
    |||||||||||||||| ||| ||||||||| ||||||||| |||| ||||||||||||||||||||    
T  12103269 ttttttattattaattgtattgccacacaagggtggtataaggtg-tattgccacctatggtggta 12103205  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 694 - 742
Target Start/End: Complemental strand, 5579770 - 5579722
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    |||| |||||||||| || |||||||||||||||||||||||| |||||    
T  5579770 ttttgggtggtggtcggggtttgaaccccagaccttgcatatattatgc 5579722  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 736
Target Start/End: Original strand, 21327520 - 21327567
Alignment:
Q  689 atctatttttggtggtggtccggatttgaaccccagaccttgcatata 736  Q
    |||||||||||||||||||| |  ||||||||||| ||||||||||||    
T  21327520 atctatttttggtggtggtcggagtttgaaccccaaaccttgcatata 21327567  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 736
Target Start/End: Complemental strand, 145595 - 145553
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatata 736  Q
    ||||||||||||||| || |||||||||| |||||||||||||    
T  145595 tttttggtggtggtcggggtttgaaccccggaccttgcatata 145553  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 695 - 741
Target Start/End: Original strand, 7994869 - 7994915
Alignment:
Q  695 ttttggtggtggtccggatttgaaccccagaccttgcatatagtatg 741  Q
    |||||||||||||| || ||||||||||||||||| |||||| ||||    
T  7994869 ttttggtggtggtcggggtttgaaccccagaccttacatatattatg 7994915  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 606 - 664
Target Start/End: Complemental strand, 41546098 - 41546041
Alignment:
Q  606 tgccacacaaaggtggtatatggtggtattgccacctatggtggtacacttatcactgc 664  Q
    ||||||| || ||||||||| |||| || |||||||||||||||||||| |||||||||    
T  41546098 tgccacataagggtggtataaggtg-tagtgccacctatggtggtacacctatcactgc 41546041  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 742
Target Start/End: Complemental strand, 3671898 - 3671853
Alignment:
Q  697 ttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    |||||||||||| || ||||||| |||||||||||||||| |||||    
T  3671898 ttggtggtggtcggggtttgaactccagaccttgcatatattatgc 3671853  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 735
Target Start/End: Complemental strand, 10026071 - 10026030
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatat 735  Q
    ||||||||||||||| || ||||||||||| |||||||||||    
T  10026071 tttttggtggtggtcggggtttgaaccccataccttgcatat 10026030  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 735
Target Start/End: Original strand, 12823249 - 12823290
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatat 735  Q
    ||||| ||||||| | ||||||||||||||||||||||||||    
T  12823249 ttttttgtggtggccgggatttgaaccccagaccttgcatat 12823290  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 694 - 742
Target Start/End: Complemental strand, 6489084 - 6489036
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||||||| | || |||||||||||||||||||||||| |||||    
T  6489084 tttttggtggtggccggggtttgaaccccagaccttgcatatattatgc 6489036  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 694 - 742
Target Start/End: Complemental strand, 15889488 - 15889440
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    ||||||||||||||| || ||||||||| |||||||||||||| |||||    
T  15889488 tttttggtggtggtcggggtttgaaccctagaccttgcatatattatgc 15889440  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 694 - 742
Target Start/End: Complemental strand, 24408572 - 24408524
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatatagtatgc 742  Q
    |||||||| |||||| || |||||||||||||||||||||||| |||||    
T  24408572 tttttggtagtggtcggggtttgaaccccagaccttgcatatattatgc 24408524  T

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Target: scaffold0111 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 735
Target Start/End: Complemental strand, 39461 - 39420
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatat 735  Q
    ||||||||||||||| || ||||||||||||||||| |||||    
T  39461 tttttggtggtggtcggggtttgaaccccagaccttacatat 39420  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 735
Target Start/End: Original strand, 53364 - 53405
Alignment:
Q  694 tttttggtggtggtccggatttgaaccccagaccttgcatat 735  Q
    ||||| ||||||||| || |||||||||||||||||||||||    
T  53364 ttttttgtggtggtcggggtttgaaccccagaccttgcatat 53405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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