View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3978_high_10 (Length: 213)
Name: NF3978_high_10
Description: NF3978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3978_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 31942625 - 31942733
Alignment:
| Q |
77 |
cattgaacccctctaatgcaacttttctaaaagtttatggaatggattccatcaataactacacatcattacattacaacaatgatttagatttgtctgc |
176 |
Q |
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| T |
31942625 |
cattgaacccttccaatgcaatttttctaaaagtttactgaatggattccatcaataactacacatcattacattacaacaataatttttattattctac |
31942724 |
T |
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| Q |
177 |
caataattg |
185 |
Q |
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| T |
31942725 |
caataattg |
31942733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 31942011 - 31942094
Alignment:
| Q |
1 |
cttaaaatgagtttttaagtgagtattatgtgtaacgtcatttatttctaatttttaaaaatcaattcctaataagcattgaac |
84 |
Q |
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| T |
31942011 |
cttaaaatgagtttttaagtgagtattatgtgtaacatcatccatttctaatttttaaatatcaatttatcataagcattgaac |
31942094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 33695196 - 33695342
Alignment:
| Q |
1 |
cttaaaatgagtttttaagtgagtattatgtgta-acgtcatttatttctaatttttaaaaatcaattcctaataagcattgaacccctctaatgcaact |
99 |
Q |
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|||||||||||||||||||||||| | |||| || | |||| ||||| ||||||| ||| |||||||| ||||||| ||| || |||||||||||||| |
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| T |
33695196 |
cttaaaatgagtttttaagtgagtttcatgtatacatgtcacctatttataattttgaaatatcaattcttaataagaatt-aaaccctctaatgcaaca |
33695294 |
T |
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| Q |
100 |
tttctaaaagtttatggaatggattccatcaataactacacatcatta |
147 |
Q |
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| T |
33695295 |
cttctacaaatttactaatttgattccatcaataattacatatcatta |
33695342 |
T |
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