View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3978_high_4 (Length: 318)

Name: NF3978_high_4
Description: NF3978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3978_high_4
NF3978_high_4
[»] chr6 (22 HSPs)
chr6 (14-318)||(14016829-14017133)
chr6 (14-318)||(13942813-13943096)
chr6 (14-318)||(13471015-13471313)
chr6 (17-318)||(14086419-14086717)
chr6 (14-318)||(14112225-14112529)
chr6 (14-259)||(13873359-13873604)
chr6 (14-169)||(13861141-13861296)
chr6 (14-253)||(13891086-13891320)
chr6 (14-169)||(14048922-14049077)
chr6 (214-318)||(13860965-13861066)
chr6 (243-318)||(13470871-13470943)
chr6 (243-318)||(14112529-14112601)
chr6 (123-259)||(14026857-14026993)
chr6 (247-318)||(13873159-13873227)
chr6 (243-318)||(13890952-13891024)
chr6 (243-318)||(14027049-14027121)
chr6 (243-317)||(14027121-14027192)
chr6 (243-318)||(14017133-14017205)
chr6 (14-75)||(14026790-14026851)
chr6 (290-318)||(13873303-13873331)
chr6 (290-318)||(13891024-13891052)
chr6 (290-318)||(14027021-14027049)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 14016829 - 14017133
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||||||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14016829 atcagaaaggccacaatctcttaaacttagttctctcagttttggtaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 14016928  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 213  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  14016929 gacatgtgaagatgggttaaagaattaagattagacaaccactgacctccactgggttcgtcgttgtcaactgttagaaatctaaaaacgtatcctcctt 14017028  T
Q  214 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttgga 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  14017029 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaattcttccttccaaaccaatgttgtggctgagatcaagaaattgcaagttgga 14017128  T
Q  314 gagat 318  Q
    |||||    
T  14017129 gagat 14017133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 13942813 - 13943096
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||| ||||||  ||||||||||||||||| |  ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13942813 atcagaaaggtcacaatatcttaaacttagttctcttagatttggtaacttaccaaccattttcaaccaactattagatttattaagattagatatcgac 13942912  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||  || |||   ||||                   
T  13942913 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccattgtgatcttcgttgtcaatagtcagaccactaa--------------- 13942997  T
Q  214 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttgga 313  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |   |||| |||||||||||||||||||||||||||    
T  13942998 ---gataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaataa---ttgttgctgagatcaagaaattgcaagttgga 13943091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 13471313 - 13471015
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||||||||||| ||||||||||||||| ||| |||||| | |||||||||  ||| ||||||||||||| || ||| |||||| |||||||||    
T  13471313 atcagaaaggccacaatttcttaaacttagttctatcagttttggtagcttaccaactgtttccaaccaactattaaatctataaagatttgatatcgac 13471214  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 213  Q
     |||||||||||||||||||||| |||| |||||||| ||||||||||| |||||| || |||||||| |  || |||   | |||||  |||||||       
T  13471213 gacatgtgaagatgggttaaagaggtaaaattagacagccactgacctctactgtgatcttcgttgtccatagtcagatcaccaaaatcatatcctc--- 13471117  T
Q  214 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttgga 313  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||   | | || | |||||||||||||||||||||||||||    
T  13471116 caagataaagcttttgtaggtttgtaagctttccaagttgagatggaatatttccttccaa---attattatagctgagatcaagaaattgcaagttgga 13471020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 14086419 - 14086717
Alignment:
Q  17 agaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgaccac 116  Q
    ||||||| ||||||| ||||||||||||||||| | |||||  ||||||||||||||||| |||||||||||| |||||| ||||||||||||  ||  |    
T  14086419 agaaaggtcacaatttcttaaacttagttctcttagttttgttaacttaccaaccatttgaaaccaactattaaatttatcaagattagatattcacatc 14086518  T
Q  117 atgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctccttcaa 216  Q
    | | ||||||||||||||||||| ||||||||||||||||||||||||||||| || | |||||||| ||| |||   |||   |  ||   || | |||    
T  14086519 aggcgaagatgggttaaagaagttagattagacaaccactgacctccactgtgatccttgttgtcaattgtcagagcactatcttcatactttcttccaa 14086618  T
Q  217 gataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagag 316  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||   |   |||| ||||||||||||||||||||||||||||||    
T  14086619 gataaagctcttgtaggttcgtaagctttccaagttgatatggaatacttccttccaagtca---ttgttgctgagatcaagaaattgcaagttggagag 14086715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 14112225 - 14112529
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||| ||||||| ||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||| |||    
T  14112225 atcagaaaggtcacaatttcttaaacttagttctcttagttttggtaacttaccaaccatttgaaaccaactattaaatttatcaagattagatattgac 14112324  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttc-gt--cgttgtcaactgttagaaatctaaaattgtatcctc 210  Q
      ||  ||||||||||||||||| || ||||||||||||||||||||||||||||| || ||   |||| ||| ||| |||   |||  |   |  | ||    
T  14112325 atcagatgaagatgggttaaagaggttagattagacaaccactgacctccactgtgatctgtactgttgccaattgtcagagcactatcagcatcccttc 14112424  T
Q  211 cttcaagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagtt 310  Q
     | ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| |   |||  ||||||||||||||||||||||||    
T  14112425 ttccaagataaagctcttgtagatttgtaagctttccaatttgagatggaatgcttccttcaaaacca---ttgatgctgagatcaagaaattgcaagtt 14112521  T
Q  311 ggagagat 318  Q
    ||| ||||    
T  14112522 ggaaagat 14112529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 13873604 - 13873359
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    ||||||||| |||||| |   ||||||||||||| ||| |||||| | ||||||||||| |||||||||||||||| || ||| |||||||||||| |||    
T  13873604 atcagaaagaccacaactttctaaacttagttctttcagttttggtagcttaccaaccaattgcaaccaactattaaatctatcaagattagatattgac 13873505  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 213  Q
     |||| |||||||||||||||||||| |||||  ||||||||| |||||||||||| || |||||||||| | | |||   |||  |   |||||||||     
T  13873504 aacatctgaagatgggttaaagaagttagattcaacaaccacttacctccactgtgatcctcgttgtcaattatcagagtactatcaccatatcctcctc 13873405  T
Q  214 caagataaagctcttgtaggtttgtaagctttccaagttgagatgg 259  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||    
T  13873404 caagataaagatcttgtaggtttgtaagctttccaagttgatatgg 13873359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 13861296 - 13861141
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||| ||||||| ||||||||||||||||| | |||||| ||||||||||||||||  |||||||||||| |||||| |||||||||||| |||    
T  13861296 atcagaaaggtcacaatttcttaaacttagttctcttagttttggtaacttaccaaccatttttaaccaactattaaatttatcaagattagatattgac 13861197  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtg 169  Q
      ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13861196 atcagatgaagatgggttaaagaagtaagattagacaaccactgacctccactgtg 13861141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 13891320 - 13891086
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||||||||| |  ||||   ||||||||||| |||| | | ||||||||||||||||||||||||||| ||||||| |||| ||||||| |||    
T  13891320 atcagaaaggccacaacttattaactctagttctctcagttttagtagcttaccaaccatttgcaaccaactattggatttatcaagactagatattgac 13891221  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 213  Q
     |||||||||||||||||||||||||||||||||| |||||  |||||||  |||| ||  ||||||||| ||||||| | |||| | | |||||||       
T  13891220 aacatgtgaagatgggttaaagaagtaagattagataacca--gacctccgttgtgatctccgttgtcaattgttagagaactaagactatatcctc--- 13891126  T
Q  214 caagataaagctcttgtaggtttgtaagctttccaagttg 253  Q
    | | || ||||||||||||||| |||||||||||||||||    
T  13891125 cgaaatgaagctcttgtaggttggtaagctttccaagttg 13891086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 14048922 - 14049077
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||| ||||||   ||||| ||||||||| ||||||||| | |||||||||||||| |||| |||||||| || ||| ||||||  |||| |||    
T  14048922 atcagaaaggtcacaatctgttaaatttagttctcccaattttggtagcttaccaaccatttccaacaaactattaaatctatcaagattcaatattgac 14049021  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtg 169  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14049022 gacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccattgtg 14049077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 214 - 318
Target Start/End: Complemental strand, 13861066 - 13860965
Alignment:
Q  214 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttgga 313  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||  |   |||| |||||||||||||||||||||||||||    
T  13861066 caagataaagctcttgtaggttcacaagctttccaagttgagatggaatgcttccttccaaaaaa---ttgtagctgagatcaagaaattgcaagttgga 13860970  T
Q  314 gagat 318  Q
    |||||    
T  13860969 gagat 13860965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 13470943 - 13470871
Alignment:
Q  243 tttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagagat 318  Q
    ||||||||||||| ||||||||||||||||||||||   ||||  |||||||||||||||||||||||||||||||    
T  13470943 tttccaagttgagttggaatgcttccttccaaacga---ttgttcctgagatcaagaaattgcaagttggagagat 13470871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 14112529 - 14112601
Alignment:
Q  243 tttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagagat 318  Q
    |||||||||||||||||||||||||||||||||| | | ||||   ||||||||||||||||||||||||||||||    
T  14112529 tttccaagttgagatggaatgcttccttccaaaccattattgt---tgagatcaagaaattgcaagttggagagat 14112601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 259
Target Start/End: Original strand, 14026857 - 14026993
Alignment:
Q  123 agatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctccttcaagataaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||  |||| ||   ||||||||  || |||   |||  |   ||| |   | |||||||||    
T  14026857 agatgggttaaagaagtaagattagacaaccactgacctccgttgtgatccctgttgtcaatagtcagaccactatcaccatattcatttccaagataaa 14026956  T
Q  223 gctcttgtaggtttgtaagctttccaagttgagatgg 259  Q
    |||||||||||||||||||||||||||||||||||||    
T  14026957 gctcttgtaggtttgtaagctttccaagttgagatgg 14026993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 13873227 - 13873159
Alignment:
Q  247 caagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagagat 318  Q
    ||||||| ||||| ||||||||||||||||||   |||| ||||||||||||||||||||||||||||||||    
T  13873227 caagttgggatggtatgcttccttccaaacga---ttgtagctgagatcaagaaattgcaagttggagagat 13873159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 13891024 - 13890952
Alignment:
Q  243 tttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagagat 318  Q
    ||||||||||||||||||||||||||||||||| ||   |||  ||| ||||||||||||||||||||||||||||    
T  13891024 tttccaagttgagatggaatgcttccttccaaaaga---ttgcggctaagatcaagaaattgcaagttggagagat 13890952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 14027049 - 14027121
Alignment:
Q  243 tttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagagat 318  Q
    |||||||||||||||||||||||||||||||||  |   |||  ||||||||||||||||||||||||||||||||    
T  14027049 tttccaagttgagatggaatgcttccttccaaataa---ttgatgctgagatcaagaaattgcaagttggagagat 14027121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 14027121 - 14027192
Alignment:
Q  243 tttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagaga 317  Q
    |||||||||||| ||||||||||||||||||||  |   |||| |||||||||||||||||||||||||||||||    
T  14027121 tttccaagttgacatggaatgcttccttccaaataa---ttgtggctgagatcaagaaattgcaagttggagaga 14027192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 14017133 - 14017205
Alignment:
Q  243 tttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagagat 318  Q
    |||||||||||||||||||||||||| ||||||  | || |||   ||||||||||||||||||||||||||||||    
T  14017133 tttccaagttgagatggaatgcttccatccaaatcattggtgt---tgagatcaagaaattgcaagttggagagat 14017205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 14026790 - 14026851
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccattt 75  Q
    ||||||||||||||||||   ||||||||||||||||| |||||| ||||||||||||||||    
T  14026790 atcagaaaggccacaattttgtaaacttagttctctcagttttggtaacttaccaaccattt 14026851  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 13873331 - 13873303
Alignment:
Q  290 gagatcaagaaattgcaagttggagagat 318  Q
    |||||||||||||||||||||||||||||    
T  13873331 gagatcaagaaattgcaagttggagagat 13873303  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 13891052 - 13891024
Alignment:
Q  290 gagatcaagaaattgcaagttggagagat 318  Q
    |||||||||||||||||||||||||||||    
T  13891052 gagatcaagaaattgcaagttggagagat 13891024  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 14027021 - 14027049
Alignment:
Q  290 gagatcaagaaattgcaagttggagagat 318  Q
    |||||||||||||||||||||||||||||    
T  14027021 gagatcaagaaattgcaagttggagagat 14027049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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