View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3978_high_7 (Length: 253)

Name: NF3978_high_7
Description: NF3978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3978_high_7
NF3978_high_7
[»] chr7 (10 HSPs)
chr7 (18-240)||(46531870-46532092)
chr7 (18-230)||(46524327-46524539)
chr7 (18-204)||(46323020-46323206)
chr7 (21-218)||(46326728-46326925)
chr7 (21-199)||(46520292-46520470)
chr7 (18-112)||(46490151-46490245)
chr7 (21-113)||(46516737-46516829)
chr7 (21-101)||(46478960-46479040)
chr7 (21-109)||(46494452-46494540)
chr7 (22-103)||(46464833-46464912)
[»] chr3 (1 HSPs)
chr3 (18-218)||(7475479-7475675)
[»] chr4 (1 HSPs)
chr4 (30-113)||(88323-88406)
[»] chr1 (1 HSPs)
chr1 (30-113)||(37151824-37151907)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 46532092 - 46531870
Alignment:
Q  18 tttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtttgtctcagtgttccactac 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46532092 tttcttgtggctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtctgtctcagtgttccactac 46531993  T
Q  118 tccgtagaaaccccaaaatcaagaccgttgatgccatgcgtgctgcttatggagatgattattatatctctagatttcaggttcttctatttctttacta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46531992 tccgtagaaaccccaaaatcaagaccgttgatgccatgcgtgctgcttatggagatgattattatatctctagatttcaggttcttctatttctttacta 46531893  T
Q  218 ccacttttctacctttctctctg 240  Q
    |||||||||||||||||||||||    
T  46531892 ccacttttctacctttctctctg 46531870  T

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Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 46524539 - 46524327
Alignment:
Q  18 tttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtttgtctcagtgttccactac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46524539 tttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtctgtctcagtgttccactac 46524440  T
Q  118 tccgtagaaaccccaaaatcaagaccgttgatgccatgcgtgctgcttatggagatgattattatatctctagatttcaggttcttctatttctttacta 217  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||    
T  46524439 tccgtagaaaccccaaaatcaggaccgttgatgccatgcatgctgcttatggagatgattattacatatgtagatttcaggttcttctatttctttatta 46524340  T
Q  218 ccacttttctacc 230  Q
    |||||||||||||    
T  46524339 ccacttttctacc 46524327  T

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Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 46323020 - 46323206
Alignment:
Q  18 tttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtttgtctcagtgttccactac 117  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |      
T  46323020 tttcttgtagctcatgattggggtgccatcattggttggtacctttgcatgtttcgccctgaaagaatcaaagcctatgtttgtctcagtgttccattta 46323119  T
Q  118 tccgtagaaaccccaaaatcaagaccgttgatgccatgcgtgctgcttatggagatgattattatatctctagatttcaggttcttc 204  Q
      ||||||||||| |||||||  || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46323120 cgcgtagaaaccctaaaatcagaactgttgatggcatgcgtgctgcttatggagatgattattatatctctagatttcaggttcttc 46323206  T

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Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 46326728 - 46326925
Alignment:
Q  21 cttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtttgtctcagtgttccactactcc 120  Q
    ||||||| |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| | ||||    
T  46326728 cttgttggtcatgatatgggtgccatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcctatgtgtgcctcagtgttccatttctcc 46326827  T
Q  121 gtagaaaccccaaaatcaagaccgttgatgccatgcgtgctgcttatggagatgattattatatctctagatttcaggttcttctatttctttactac 218  Q
     | ||||||| |||||||  |||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  46326828 atcgaaaccctaaaatcagaaccgttgatggcatgcgtgcggtttatggagatgattattatatctgtagatttcaggttcttccatttctttactac 46326925  T

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Target: chr7; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 46520470 - 46520292
Alignment:
Q  21 cttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtttgtctcagtgttccactactcc 120  Q
    ||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |   ||    
T  46520470 cttgtagctcatgattggggtgccatgattggttggtatctttgcatgtttcgccctgaaagaatcaaagcctatgtttgtcttagtgttccatttaacc 46520371  T
Q  121 gtagaaaccccaaaatcaagaccgttgatgccatgcgtgctgcttatggagatgattattatatctctagatttcaggt 199  Q
     ||||||||||| | | ||| |  ||||||  | |||||||||||||||||| |||||||||||||  |||||||||||    
T  46520370 atagaaaccccacagtgaagcctattgatggtaggcgtgctgcttatggagacgattattatatctgcagatttcaggt 46520292  T

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Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 46490245 - 46490151
Alignment:
Q  18 tttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtttgtctcagtgttcc 112  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| || || ||||| ||||||||    
T  46490245 tttcttgtagctcatgattggggtgccatcattggttggtatctttgtttgtttcgccctgaaagaatcaaagcctacgtgtgtctgagtgttcc 46490151  T

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Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 46516829 - 46516737
Alignment:
Q  21 cttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtttgtctcagtgttcca 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | | |||| ||||||||||| ||||||||||||    
T  46516829 cttgtggctcatgattggggtgctatcattggttggtatctttgtttgtttcgtcctgagaaagtcaaggcttatgtttgcctcagtgttcca 46516737  T

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Target: chr7; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 46479040 - 46478960
Alignment:
Q  21 cttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtttgt 101  Q
    ||||| ||||||||||||||||| || |||||||||||||||||| | ||||||||||||| |||||||||||||||||||    
T  46479040 cttgtagctcatgattggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtttgt 46478960  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 46494540 - 46494452
Alignment:
Q  21 cttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtttgtctcagtgt 109  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||  ||||||||||||| ||| | ||||| ||||| |||||||||||    
T  46494540 cttgtggctcatgattggggtgccatcgttggttggtatctttgcttgtttcgccctgagagagttaaagcctatgtgtgtctcagtgt 46494452  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 46464912 - 46464833
Alignment:
Q  22 ttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtttgtct 103  Q
    ||||||||||||||||||||||  | | ||||||||||||  || ||||||| ||||||||| ||||||| |||||||||||    
T  46464912 ttgttgctcatgattggggtgccttaactggttggtatct--gtttgtttcgtcctgaaagagtcaaagcctatgtttgtct 46464833  T

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Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 7475479 - 7475675
Alignment:
Q  18 tttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtttgtctcagtgttccactac 117  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||||  | |    
T  7475479 tttcttgtggctcatgattggggtgccatcattggttggtacctttgcacgtttcgccctgaaagaatcaaagcctatgtttgtctcagtgttcccttgc 7475578  T
Q  118 tccgtagaaaccccaaaatcaagaccgttgatgccatgcgtgctgcttatggagatgattattatatctctagatttcaggttcttctatttctttacta 217  Q
     ||| |||||||| ||| | ||||| ||||||| ||||| ||||||||||||||||||||||||    | |||||||||||||||||||||||| |||||    
T  7475579 accgaagaaaccctaaactgaagacagttgatggcatgcatgctgcttatggagatgattatta----tgtagatttcaggttcttctatttctatacta 7475674  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 88323 - 88406
Alignment:
Q  30 catgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtttgtctcagtgttcca 113  Q
    |||||||||||||| ||||| ||||||||| |||| ||||| || || |||||| |||| || ||||||||||| |||||||||    
T  88323 catgattggggtgcaatcatcggttggtatgtttgcatgttccgaccagaaagagtcaaggcctatgtttgtcttagtgttcca 88406  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 37151907 - 37151824
Alignment:
Q  30 catgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtttgtctcagtgttcca 113  Q
    |||||||||||||| ||||| ||||||||| |||| ||||| || || |||||| |||| || ||||||||||| |||||||||    
T  37151907 catgattggggtgcaatcatcggttggtatgtttgcatgttccgaccagaaagagtcaaggcctatgtttgtcttagtgttcca 37151824  T

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