View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3978_high_8 (Length: 250)
Name: NF3978_high_8
Description: NF3978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3978_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31941882 - 31941644
Alignment:
| Q |
1 |
atcattctccagcatcaaatacaaatgatacaactgcaaataggaatggcttaaggtttcctcatcctcctgttaatcaagaagaccatgataatcatcg |
100 |
Q |
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| T |
31941882 |
atcattctccagcatccaatacaaatgatacaactgcaaataggaatgacttaaggtttcctcatcctcctgttaatcaacaacaccatgata-tcatcg |
31941784 |
T |
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| Q |
101 |
tccaacacttcctatgcatggagttcaaccaaatcctccacgtggtggtgcaattcctctacaaccaggccttcatattttgcaacctcgtggagtgatg |
200 |
Q |
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| T |
31941783 |
tccaacacttcctatgcatggagttcaaccaaatcctccacgcggtggtgcaaatcctctacaatcaggccttcatattttgcaatctcgtggaatgatg |
31941684 |
T |
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| Q |
201 |
ccagataggactctcagacatcaaagtgttcatccctttg |
240 |
Q |
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| T |
31941683 |
ccagagatgactctcggacatcaaagtgttcatccctttg |
31941644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 74 - 240
Target Start/End: Complemental strand, 31951752 - 31951586
Alignment:
| Q |
74 |
taatcaagaagaccatgataatcatcgtccaacacttcctatgcatggagttcaaccaaatcctccacgtggtggtgcaattcctctacaaccaggcctt |
173 |
Q |
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| T |
31951752 |
taatcaacaacacaatgttaatcatcgcccaacacttcctatgcatggagttcaaccaaatcctccacttggtggtgcaatccctctacaaccaggcctt |
31951653 |
T |
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| Q |
174 |
catattttgcaacctcgtggagtgatgccagataggactctcagacatcaaagtgttcatccctttg |
240 |
Q |
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| T |
31951652 |
catattttggaatctcgtggtgtgatgtctgagaacactctcagacatcaaagtgttcatccctttg |
31951586 |
T |
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