View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3978_low_10 (Length: 235)
Name: NF3978_low_10
Description: NF3978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3978_low_10 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 26930362 - 26930143
Alignment:
| Q |
16 |
caacattgaatgttttgaaaatctttcgagtatcacaatgggtttaccataaaattatgttggggcatctctggctgctacaactgtacagtgaatatgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
26930362 |
caacattgaatgttttgaaaatctttcgagtatcacaatgggtttaccataaaattatgttggggcatctctggctgctacaattgtacagagaatatgt |
26930263 |
T |
|
| Q |
116 |
ttgacacattcatttcttgttattttgatgatttgtgaatattaaaatgatatggaaatatctcatgaaattaatattatcttatcttaaaacaaaggtg |
215 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26930262 |
ttggcacattcatatcttgttattttgatgattggtgaatgttaaaatgatatggaaatatctcatgaaattaatattatcgtatcttaaaacaaaggtg |
26930163 |
T |
|
| Q |
216 |
atctataaggactcatttcc |
235 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
26930162 |
atctataaggactcctttcc |
26930143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 26963203 - 26963091
Alignment:
| Q |
123 |
attcatttcttgttattttgatgatttgtgaatattaaaatgatatggaaatatctcatgaaattaatattatcttatcttaaaacaaaggtgatctata |
222 |
Q |
| |
|
||||||||| |||||||||||||| | |||||| ||||||||||||||| |||||||||||| ||||||| || |||||||||| ||||||||| | || |
|
|
| T |
26963203 |
attcatttcatgttattttgatgactggtgaatgttaaaatgatatggatatatctcatgaatataatattgtcgtatcttaaaagaaaggtgatatcta |
26963104 |
T |
|
| Q |
223 |
aggactcatttcc |
235 |
Q |
| |
|
|||| | |||||| |
|
|
| T |
26963103 |
aggattgatttcc |
26963091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 26963286 - 26963226
Alignment:
| Q |
18 |
acattgaatgttttgaaaatctttcgagtatcacaat-gggtttaccataaaattatgttg |
77 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | ||| ||||||| ||||||||||||||| |
|
|
| T |
26963286 |
acattgaatgttttgaaaatatttcgagtataaaaatggggtttatcataaaattatgttg |
26963226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 26940776 - 26940843
Alignment:
| Q |
28 |
ttttgaaaatctttcgagtatcacaatggg-tttaccataaaattatgttggggcatctctggctgct |
94 |
Q |
| |
|
|||||| ||| |||||||||| | |||||| |||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
26940776 |
ttttgagaatatttcgagtataaaaatggggtttatcataaaattatgttgcggcatctttggctgct |
26940843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 29413880 - 29413679
Alignment:
| Q |
20 |
attgaatgttttgaaaatctttcgagtatcacaatggg-tttaccataaaattatgttggggcatctctggctgctacaactgtacagtgaatatgtttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||| |||| | ||||||||||| |||||| || ||||||| ||| || |||| |
|
|
| T |
29413880 |
attgaatgttttgaaaatctttcgagtatctaaatggggtttaccataaagttatagtagggcatctctg-ctgctataattgtacagagaacatctttg |
29413782 |
T |
|
| Q |
119 |
acacatt---catttcttgttattttgatgatttgtgaatattaaaatgatatggaaatatctcatgaaattaatattatcttatcttaaaacaaaggtg |
215 |
Q |
| |
|
||| || ||||||||||||||| ||||||| || ||| ||| ||| ||||||||||||||||||||||||||||| || |||||| |||| |||||| |
|
|
| T |
29413781 |
gcacgttgttcatttcttgttatttcgatgattggttaatgttacaataatatggaaatatctcatgaaattaatattttcgtatcttgaaac-aaggtg |
29413683 |
T |
|
| Q |
216 |
atct |
219 |
Q |
| |
|
|||| |
|
|
| T |
29413682 |
atct |
29413679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 27564520 - 27564429
Alignment:
| Q |
124 |
ttcatttcttgttattttgatgatttgtgaatattaaaatgatatggaaatatctcatgaaattaatattatcttatcttaaaacaaaggtg |
215 |
Q |
| |
|
||||||||||||||||||||||||| || ||| ||| ||| ||||||||||||||||||||||||||||| || |||||||| ||||||||| |
|
|
| T |
27564520 |
ttcatttcttgttattttgatgattggttaatgttagaataatatggaaatatctcatgaaattaatattttcgtatcttaagacaaaggtg |
27564429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 36673251 - 36673056
Alignment:
| Q |
20 |
attgaatgttttgaaaatctttcgagtatcacaatggg-tttaccataaaattatgttggggcatctctggctgctacaactgtacagtgaatatgtttg |
118 |
Q |
| |
|
|||||| |||||||||||||||| | ||||| |||||| |||||||||||||||||||||||||||||||||| ||| || |||||| ||| | || |
|
|
| T |
36673251 |
attgaaggttttgaaaatctttcaaatatcaaaatggggtttaccataaaattatgttggggcatctctggcttctataattgtacaaagaacttcttaa |
36673152 |
T |
|
| Q |
119 |
acac---attcatttcttgttattttgatgatttgtgaatattaaaatgatatggaaatatctcatgaaattaatattatcttatcttaaaacaaaggtg |
215 |
Q |
| |
|
||| |||||||||||||||||||||| || ||| | | |||||||| ||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
36673151 |
gcacgatgttcatttcttgttattttgatg--------atgttagactaatatggaaggatctcatgaaattaatattttcgcatcttaaaacaaaggtg |
36673060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 24202154 - 24202370
Alignment:
| Q |
24 |
aatgttttgaaaatctttcgagtatcacaatggg-tttaccataaaattatgttggggcatctctggctgctacaactgtacagtgaatatgtttgaca- |
121 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||||| |||||| |||||||||||||||||||||||| || |||||| |||||| ||| || |
|
|
| T |
24202154 |
aatgttttgaaaatctttctagtatcaaaatggggtttaccttaaaatcatgttggggcatctctggctgctagaattgtacaaagaatatctttagcat |
24202253 |
T |
|
| Q |
122 |
--cattcatttcttgttattttgatgatttg-tgaatattaaaatgatatggaaatatctcatgaaattaatattatcttatcttaaaacaaaggtgatc |
218 |
Q |
| |
|
||||| | |||||||||| |||| | | | | ||| ||| ||||||||||||||||||| |||||||| || |||||||||||||||| |||| |
|
|
| T |
24202254 |
gttgttcatcttttgttattttcatgaatggtttggtgttagaatattatggaaatatctcatgaatttaatattttcgtatcttaaaacaaaggagatc |
24202353 |
T |
|
| Q |
219 |
tataaggactcatttcc |
235 |
Q |
| |
|
||| |||| | |||||| |
|
|
| T |
24202354 |
tatgaggattgatttcc |
24202370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University