View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3978_low_3 (Length: 549)
Name: NF3978_low_3
Description: NF3978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3978_low_3 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 3522511 - 3521963
Alignment:
| Q |
1 |
agaaaacaagcagcttaacaaaaactgatccctatacatgtgaatttcattaaccttatccctttctcttcgccccgaaggagaatacaaagttgctcga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3522511 |
agaaaacaagcagcttaacaaaaactgatccctatacatgtgaatttcattaaccttatccctttctcttcgccccgaaggagaatacaaagttgctcga |
3522412 |
T |
|
| Q |
101 |
tacaccttggagccacggctagcttcttgaacacaatgaatgagagttctcggacctgtaatatcgggaacatagctaaccgtaactatacgttctgaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3522411 |
tacaccttggagccacggctagcttcttgaacacattgaatgagagttctcggacctgtaatatcgggaacatagctaaccgtaactatacgttctgaaa |
3522312 |
T |
|
| Q |
201 |
agtcaatttcaacacggtttacacccgcaactaactcaagataagacaccaagacattagcatcttcttcagaatcaatcccttcaactttaagatgaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3522311 |
agtcaatttcaacacggtttacacccgcaactaactcaagataagacaccaagacattagcatcttcttcagaatcaatcccttcaactttaagatgaac |
3522212 |
T |
|
| Q |
301 |
tttatttgcgtcattcccagagctaataagctctgctccaaatcccgcatcttctatcgattcaattatcttttcaggattggcaaggttaggatcatag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3522211 |
tttatttgcgtcattcccagagctaataagctctgctccaaatcccgcatcttctatcgattcaattatcttttcaggattggcaaggttaggatcatag |
3522112 |
T |
|
| Q |
401 |
tgcacttttgcctcctctaaagctaaaccaactattgcccttttcactccatcaatcatttgaagtgctttctcaacagactcagaacaacttgtacaag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3522111 |
tgcacttttgcctcctctaaagctaaaccaactattgcccttttcactccatcaatcatttgaagtgctttctcaacagactcagaacaacttgtacaag |
3522012 |
T |
|
| Q |
501 |
ccattcctttaatcctaactcggcacacagatatatcttggtcatgatc |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3522011 |
ccattcctttaatcctaactcggcacacagatatatcttggtcatgatc |
3521963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University