View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3978_low_4 (Length: 320)
Name: NF3978_low_4
Description: NF3978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3978_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 3521986 - 3521694
Alignment:
| Q |
11 |
cacagatatatcttggtcatgatcatgaacctcattaaccctaaacccactctcttccatactttcttttattcttttcgcctacaattnnnnnnntaac |
110 |
Q |
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| T |
3521986 |
cacagatatatcttggtcatgatcatgaacctcattaaccctaaacccactctcttccatactttcttttattcttttcgcctacaattaagaaaataac |
3521887 |
T |
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| Q |
111 |
ccataattaattaaaaacacaattcagaacctaataattacaacttttttcttgattttttaacaataaaataatcacttctatgactagtgaataaatc |
210 |
Q |
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| T |
3521886 |
ccataattaattaaaaacacaattcagaacctaataattacaacttttttcttgattttttaacaataaaataatcacttctatgactagtgaataaatc |
3521787 |
T |
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| Q |
211 |
atgaaattcatataataaaattaaataatgatgattttgaggcttacagttattagtttaggaacaaatttgaccgcggcgcggccatcaatt |
303 |
Q |
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| T |
3521786 |
atgaaattcatataataaaattaaataatgatgattttgaggcttacagttatgagtttaggaacaaatttgaccgcggcgcggccatcaatt |
3521694 |
T |
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