View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3978_low_5 (Length: 318)

Name: NF3978_low_5
Description: NF3978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3978_low_5
NF3978_low_5
[»] chr6 (22 HSPs)
chr6 (14-318)||(14016829-14017133)
chr6 (14-318)||(13942813-13943096)
chr6 (14-318)||(13471015-13471313)
chr6 (17-318)||(14086419-14086717)
chr6 (14-318)||(14112225-14112529)
chr6 (14-259)||(13873359-13873604)
chr6 (14-169)||(13861141-13861296)
chr6 (14-253)||(13891086-13891320)
chr6 (14-169)||(14048922-14049077)
chr6 (214-318)||(13860965-13861066)
chr6 (243-318)||(13470871-13470943)
chr6 (243-318)||(14112529-14112601)
chr6 (123-259)||(14026857-14026993)
chr6 (247-318)||(13873159-13873227)
chr6 (243-318)||(13890952-13891024)
chr6 (243-318)||(14027049-14027121)
chr6 (243-317)||(14027121-14027192)
chr6 (243-318)||(14017133-14017205)
chr6 (14-75)||(14026790-14026851)
chr6 (290-318)||(13873303-13873331)
chr6 (290-318)||(13891024-13891052)
chr6 (290-318)||(14027021-14027049)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 14016829 - 14017133
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||||||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14016829 atcagaaaggccacaatctcttaaacttagttctctcagttttggtaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 14016928  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 213  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  14016929 gacatgtgaagatgggttaaagaattaagattagacaaccactgacctccactgggttcgtcgttgtcaactgttagaaatctaaaaacgtatcctcctt 14017028  T
Q  214 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttgga 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  14017029 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaattcttccttccaaaccaatgttgtggctgagatcaagaaattgcaagttgga 14017128  T
Q  314 gagat 318  Q
    |||||    
T  14017129 gagat 14017133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 13942813 - 13943096
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||| ||||||  ||||||||||||||||| |  ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13942813 atcagaaaggtcacaatatcttaaacttagttctcttagatttggtaacttaccaaccattttcaaccaactattagatttattaagattagatatcgac 13942912  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||  || |||   ||||                   
T  13942913 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccattgtgatcttcgttgtcaatagtcagaccactaa--------------- 13942997  T
Q  214 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttgga 313  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |   |||| |||||||||||||||||||||||||||    
T  13942998 ---gataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaataa---ttgttgctgagatcaagaaattgcaagttgga 13943091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 13471313 - 13471015
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||||||||||| ||||||||||||||| ||| |||||| | |||||||||  ||| ||||||||||||| || ||| |||||| |||||||||    
T  13471313 atcagaaaggccacaatttcttaaacttagttctatcagttttggtagcttaccaactgtttccaaccaactattaaatctataaagatttgatatcgac 13471214  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 213  Q
     |||||||||||||||||||||| |||| |||||||| ||||||||||| |||||| || |||||||| |  || |||   | |||||  |||||||       
T  13471213 gacatgtgaagatgggttaaagaggtaaaattagacagccactgacctctactgtgatcttcgttgtccatagtcagatcaccaaaatcatatcctc--- 13471117  T
Q  214 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttgga 313  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||   | | || | |||||||||||||||||||||||||||    
T  13471116 caagataaagcttttgtaggtttgtaagctttccaagttgagatggaatatttccttccaa---attattatagctgagatcaagaaattgcaagttgga 13471020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 14086419 - 14086717
Alignment:
Q  17 agaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgaccac 116  Q
    ||||||| ||||||| ||||||||||||||||| | |||||  ||||||||||||||||| |||||||||||| |||||| ||||||||||||  ||  |    
T  14086419 agaaaggtcacaatttcttaaacttagttctcttagttttgttaacttaccaaccatttgaaaccaactattaaatttatcaagattagatattcacatc 14086518  T
Q  117 atgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctccttcaa 216  Q
    | | ||||||||||||||||||| ||||||||||||||||||||||||||||| || | |||||||| ||| |||   |||   |  ||   || | |||    
T  14086519 aggcgaagatgggttaaagaagttagattagacaaccactgacctccactgtgatccttgttgtcaattgtcagagcactatcttcatactttcttccaa 14086618  T
Q  217 gataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagag 316  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||   |   |||| ||||||||||||||||||||||||||||||    
T  14086619 gataaagctcttgtaggttcgtaagctttccaagttgatatggaatacttccttccaagtca---ttgttgctgagatcaagaaattgcaagttggagag 14086715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 14112225 - 14112529
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||| ||||||| ||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||| |||    
T  14112225 atcagaaaggtcacaatttcttaaacttagttctcttagttttggtaacttaccaaccatttgaaaccaactattaaatttatcaagattagatattgac 14112324  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttc-gt--cgttgtcaactgttagaaatctaaaattgtatcctc 210  Q
      ||  ||||||||||||||||| || ||||||||||||||||||||||||||||| || ||   |||| ||| ||| |||   |||  |   |  | ||    
T  14112325 atcagatgaagatgggttaaagaggttagattagacaaccactgacctccactgtgatctgtactgttgccaattgtcagagcactatcagcatcccttc 14112424  T
Q  211 cttcaagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagtt 310  Q
     | ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| |   |||  ||||||||||||||||||||||||    
T  14112425 ttccaagataaagctcttgtagatttgtaagctttccaatttgagatggaatgcttccttcaaaacca---ttgatgctgagatcaagaaattgcaagtt 14112521  T
Q  311 ggagagat 318  Q
    ||| ||||    
T  14112522 ggaaagat 14112529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 13873604 - 13873359
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    ||||||||| |||||| |   ||||||||||||| ||| |||||| | ||||||||||| |||||||||||||||| || ||| |||||||||||| |||    
T  13873604 atcagaaagaccacaactttctaaacttagttctttcagttttggtagcttaccaaccaattgcaaccaactattaaatctatcaagattagatattgac 13873505  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 213  Q
     |||| |||||||||||||||||||| |||||  ||||||||| |||||||||||| || |||||||||| | | |||   |||  |   |||||||||     
T  13873504 aacatctgaagatgggttaaagaagttagattcaacaaccacttacctccactgtgatcctcgttgtcaattatcagagtactatcaccatatcctcctc 13873405  T
Q  214 caagataaagctcttgtaggtttgtaagctttccaagttgagatgg 259  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||    
T  13873404 caagataaagatcttgtaggtttgtaagctttccaagttgatatgg 13873359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 13861296 - 13861141
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||| ||||||| ||||||||||||||||| | |||||| ||||||||||||||||  |||||||||||| |||||| |||||||||||| |||    
T  13861296 atcagaaaggtcacaatttcttaaacttagttctcttagttttggtaacttaccaaccatttttaaccaactattaaatttatcaagattagatattgac 13861197  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtg 169  Q
      ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13861196 atcagatgaagatgggttaaagaagtaagattagacaaccactgacctccactgtg 13861141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 13891320 - 13891086
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||||||||| |  ||||   ||||||||||| |||| | | ||||||||||||||||||||||||||| ||||||| |||| ||||||| |||    
T  13891320 atcagaaaggccacaacttattaactctagttctctcagttttagtagcttaccaaccatttgcaaccaactattggatttatcaagactagatattgac 13891221  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 213  Q
     |||||||||||||||||||||||||||||||||| |||||  |||||||  |||| ||  ||||||||| ||||||| | |||| | | |||||||       
T  13891220 aacatgtgaagatgggttaaagaagtaagattagataacca--gacctccgttgtgatctccgttgtcaattgttagagaactaagactatatcctc--- 13891126  T
Q  214 caagataaagctcttgtaggtttgtaagctttccaagttg 253  Q
    | | || ||||||||||||||| |||||||||||||||||    
T  13891125 cgaaatgaagctcttgtaggttggtaagctttccaagttg 13891086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 14048922 - 14049077
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 113  Q
    |||||||||| ||||||   ||||| ||||||||| ||||||||| | |||||||||||||| |||| |||||||| || ||| ||||||  |||| |||    
T  14048922 atcagaaaggtcacaatctgttaaatttagttctcccaattttggtagcttaccaaccatttccaacaaactattaaatctatcaagattcaatattgac 14049021  T
Q  114 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtg 169  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14049022 gacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccattgtg 14049077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 214 - 318
Target Start/End: Complemental strand, 13861066 - 13860965
Alignment:
Q  214 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttgga 313  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||  |   |||| |||||||||||||||||||||||||||    
T  13861066 caagataaagctcttgtaggttcacaagctttccaagttgagatggaatgcttccttccaaaaaa---ttgtagctgagatcaagaaattgcaagttgga 13860970  T
Q  314 gagat 318  Q
    |||||    
T  13860969 gagat 13860965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 13470943 - 13470871
Alignment:
Q  243 tttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagagat 318  Q
    ||||||||||||| ||||||||||||||||||||||   ||||  |||||||||||||||||||||||||||||||    
T  13470943 tttccaagttgagttggaatgcttccttccaaacga---ttgttcctgagatcaagaaattgcaagttggagagat 13470871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 14112529 - 14112601
Alignment:
Q  243 tttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagagat 318  Q
    |||||||||||||||||||||||||||||||||| | | ||||   ||||||||||||||||||||||||||||||    
T  14112529 tttccaagttgagatggaatgcttccttccaaaccattattgt---tgagatcaagaaattgcaagttggagagat 14112601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 259
Target Start/End: Original strand, 14026857 - 14026993
Alignment:
Q  123 agatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctccttcaagataaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||  |||| ||   ||||||||  || |||   |||  |   ||| |   | |||||||||    
T  14026857 agatgggttaaagaagtaagattagacaaccactgacctccgttgtgatccctgttgtcaatagtcagaccactatcaccatattcatttccaagataaa 14026956  T
Q  223 gctcttgtaggtttgtaagctttccaagttgagatgg 259  Q
    |||||||||||||||||||||||||||||||||||||    
T  14026957 gctcttgtaggtttgtaagctttccaagttgagatgg 14026993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 13873227 - 13873159
Alignment:
Q  247 caagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagagat 318  Q
    ||||||| ||||| ||||||||||||||||||   |||| ||||||||||||||||||||||||||||||||    
T  13873227 caagttgggatggtatgcttccttccaaacga---ttgtagctgagatcaagaaattgcaagttggagagat 13873159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 13891024 - 13890952
Alignment:
Q  243 tttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagagat 318  Q
    ||||||||||||||||||||||||||||||||| ||   |||  ||| ||||||||||||||||||||||||||||    
T  13891024 tttccaagttgagatggaatgcttccttccaaaaga---ttgcggctaagatcaagaaattgcaagttggagagat 13890952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 14027049 - 14027121
Alignment:
Q  243 tttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagagat 318  Q
    |||||||||||||||||||||||||||||||||  |   |||  ||||||||||||||||||||||||||||||||    
T  14027049 tttccaagttgagatggaatgcttccttccaaataa---ttgatgctgagatcaagaaattgcaagttggagagat 14027121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 14027121 - 14027192
Alignment:
Q  243 tttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagaga 317  Q
    |||||||||||| ||||||||||||||||||||  |   |||| |||||||||||||||||||||||||||||||    
T  14027121 tttccaagttgacatggaatgcttccttccaaataa---ttgtggctgagatcaagaaattgcaagttggagaga 14027192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 14017133 - 14017205
Alignment:
Q  243 tttccaagttgagatggaatgcttccttccaaacgaatgttgtcgctgagatcaagaaattgcaagttggagagat 318  Q
    |||||||||||||||||||||||||| ||||||  | || |||   ||||||||||||||||||||||||||||||    
T  14017133 tttccaagttgagatggaatgcttccatccaaatcattggtgt---tgagatcaagaaattgcaagttggagagat 14017205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 14026790 - 14026851
Alignment:
Q  14 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccattt 75  Q
    ||||||||||||||||||   ||||||||||||||||| |||||| ||||||||||||||||    
T  14026790 atcagaaaggccacaattttgtaaacttagttctctcagttttggtaacttaccaaccattt 14026851  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 13873331 - 13873303
Alignment:
Q  290 gagatcaagaaattgcaagttggagagat 318  Q
    |||||||||||||||||||||||||||||    
T  13873331 gagatcaagaaattgcaagttggagagat 13873303  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 13891052 - 13891024
Alignment:
Q  290 gagatcaagaaattgcaagttggagagat 318  Q
    |||||||||||||||||||||||||||||    
T  13891052 gagatcaagaaattgcaagttggagagat 13891024  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 14027021 - 14027049
Alignment:
Q  290 gagatcaagaaattgcaagttggagagat 318  Q
    |||||||||||||||||||||||||||||    
T  14027021 gagatcaagaaattgcaagttggagagat 14027049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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