View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3978_low_7 (Length: 301)
Name: NF3978_low_7
Description: NF3978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3978_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 47370958 - 47371203
Alignment:
| Q |
17 |
aggaagtagtagcggcggcggaatgatgcaaaggttggagaaggggcaatgttgtttatggagagttaaggtacatgcaattttttagtgtttgtcttgt |
116 |
Q |
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| T |
47370958 |
aggaagtagtagcggcggcggaatgatgcaaaggttggagaaggggcaatgttgtttatggagagttaaggtacatgcaatttttgagtgtttgtcttgt |
47371057 |
T |
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| Q |
117 |
ttccgttataagaatattagcaaggaggaagttgaaaggaagagtttagagcttagtaggttaataaaaagttatgtgggatgaggttttgttctatact |
216 |
Q |
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| T |
47371058 |
ttccgttataagaatattagcaaggaggaagttgaaaggaagattttagagcttagtaggttaataaaaaactatgtgggatgaggttttgttctatact |
47371157 |
T |
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| Q |
217 |
tgggtaatcttaaatggttgtttgagttctggacaaaattattatg |
262 |
Q |
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| T |
47371158 |
tgggtaatcttaaatggttgtttgagttctggacaaaattattatg |
47371203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 7173533 - 7173603
Alignment:
| Q |
125 |
taagaatattagcaaggaggaagttgaaaggaagagtttagagcttagtaggttaataaaaagttatgtgg |
195 |
Q |
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| T |
7173533 |
taagaatattagcaagaaggaagttgaaaggaagattgtagatctgaggaggctaataagaatttatgtgg |
7173603 |
T |
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