View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3979_high_6 (Length: 363)
Name: NF3979_high_6
Description: NF3979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3979_high_6 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 52761211 - 52761557
Alignment:
| Q |
17 |
aaaacaaataaggaattataaacttgaatctaattgtcttctctaaacacaaacaattaaatatcaacagcttagtgatggtttaggtgaacattaaaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
52761211 |
aaaacaaataaggaattataaacttgaatctaattgtcttctctaaacacaaacaattaaatatcaacagcttggtgatggtttaggtgaactttaaaaa |
52761310 |
T |
|
| Q |
117 |
ctataccttctctaaaacaagcttgtactctataagttcattataagtgtgctgcaacttctcattgtttgaattaatctcaattagctcagcttcaagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52761311 |
ctataccttctctaaaacaagcttgtactctataagttcattataagtgtgctgcaacttctcattgtttgaattaatctcaattagctcggcttcaagt |
52761410 |
T |
|
| Q |
217 |
tctgctagtttaacctatatccatgaagaaaaattgtgttgcatggcaatgctatcttaaatgtacggtagaaaagatatgaaaattttaaaaacacctg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52761411 |
tctgctagtttaacctatatccatgaagaaaaattgtgttacatggcaatgctctcttaaatgtacggtagaaaagatatgaaaattttaaaaacacctg |
52761510 |
T |
|
| Q |
317 |
acaacctccaatttttctagatcaatagaaccatctctcgttgacca |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52761511 |
acaacctccaatttttctagatcaatagaaccatctcttgttgacca |
52761557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University