View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3979_high_7 (Length: 355)
Name: NF3979_high_7
Description: NF3979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3979_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 337
Target Start/End: Original strand, 10979442 - 10979768
Alignment:
| Q |
11 |
caaaggtacaaagaaattaggcattgtagtgttaaaataattttcatcaagtgttaatatttgaagattcaccaatgtagctatctttggtggaatagaa |
110 |
Q |
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| T |
10979442 |
caaaggttcaaagaaattaggcattgtagtgttaaagtaattttcatcaagtgttaatatttgaagattcaccaatgtagctatctttggtggaatagaa |
10979541 |
T |
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| Q |
111 |
ccaaataaaaaatttgaactcaaatccaaaacttcaagcaaagatagcctatgaattttatcagaaagtggaccccatattcctaaagaaaccaaactaa |
210 |
Q |
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| T |
10979542 |
ccaaataagaaatttgaactcaaatccaaaacttcaagcaaagatagcctatgaattttatcagaaagtggaccccatattcctaaagaaaccaaactaa |
10979641 |
T |
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| Q |
211 |
gtactcttaaacttgttaaccttgtcaatgttgtaacaaaagaatcaatagagaaacttttagatagagtatgattaggaactgcaaatccattgaaact |
310 |
Q |
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| T |
10979642 |
gcacccttaaacttgttaaccttgtcaatgttgtaacaaaagaatcaatagagaaacttttggatagagtatgattaggaactgcaaatccattgaaact |
10979741 |
T |
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| Q |
311 |
ttcaacctttacatgtttatgatgatt |
337 |
Q |
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| T |
10979742 |
ttcaacctttacatgtttatgatgatt |
10979768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 311
Target Start/End: Complemental strand, 8165821 - 8165535
Alignment:
| Q |
25 |
aattaggcattgtagtgttaaaataattttcatcaagtgttaatatttgaagattcaccaatgtagctatctttggtggaatagaaccaaataaaaaatt |
124 |
Q |
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| T |
8165821 |
aattaggcatagtggtgttaaaataattttcatcaagtgttagtgattgaagttttaccatagttgagatttttggtggaatggtaccaaataggaaatt |
8165722 |
T |
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| Q |
125 |
tgaactcaaatccaaaacttcaagcaaagatagcctatgaattttatcagaaagtggaccccatattcctaaagaaaccaaactaagtactcttaaactt |
224 |
Q |
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| T |
8165721 |
tgaactcatatcaaaaacttgaagaaaagtgagagattgaatcttattaggaagtttcccccaaattcctaatgaaaccaaactaagaacctttagggtt |
8165622 |
T |
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| Q |
225 |
gttaaccttgtcaatgttgtaacaaaagaatcaatagagaaacttttagatagagtatgattaggaactgcaaatccattgaaactt |
311 |
Q |
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| T |
8165621 |
ttcaactttgtcaatgtgatgaaaaatgaatcaattgagaaattcatggatagtgtttgatttggaattgcaaatccattgaaactt |
8165535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 564426 - 564501
Alignment:
| Q |
132 |
aaatccaaaacttcaagcaaagatagcctatgaattttatcagaaagtggaccccatattcctaaagaaaccaaact |
208 |
Q |
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||||||||||| ||||||||||||| ||||||||| ||| || | ||||||||| | |||||||| |||||||||| |
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| T |
564426 |
aaatccaaaacatcaagcaaagataacctatgaatcttacca-agagtggacccaagattcctaataaaaccaaact |
564501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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