View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3979_high_8 (Length: 340)
Name: NF3979_high_8
Description: NF3979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3979_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 48 - 322
Target Start/End: Complemental strand, 32040588 - 32040314
Alignment:
| Q |
48 |
ttaacgtacctgaattctgacgtaatccgtacgattccaacagaatgcgtttccaagcatttggtcaatcgtctcggaaacgccgtcaagaacaatgtca |
147 |
Q |
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| T |
32040588 |
ttaacgtacctgaattctgacgtaatccgtacgattccaacagaatgcgtttccaagcatttggtcaatcgtctcggaaacgccgtcaagaacaatgtca |
32040489 |
T |
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| Q |
148 |
accattaacggcgttgagcacgtgcggttttcgttctcacgtgtcttcgaattcgacgatccgtttcccaatgaaagaaccaaaagatcctccacgccgt |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32040488 |
accattaacggcgttgagcacgtgcggttttcgttctcacgtgtcttcgaattcgacgatccgtttcccaatgaaagaaccaaaagatcctccacgccgt |
32040389 |
T |
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| Q |
248 |
tcaccgttggaaaatcacgtttgttgtgtagaacatgcgtgactgcggcggcggtaggattgttcatgactaaac |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32040388 |
tcaccgttggaaaatcacgtttgttgtgtagaacatgcgtgactgcggcggcggtaggattgttcatgactaaac |
32040314 |
T |
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