View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3979_low_1 (Length: 565)
Name: NF3979_low_1
Description: NF3979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3979_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 14 - 549
Target Start/End: Complemental strand, 47122823 - 47122269
Alignment:
| Q |
14 |
gagatgaaacatgtattttaaagataaattagcaaatgtagcttgtagcaaaagcgtctcttatatgaatgtgtgaatatcatttcttgaccattttgat |
113 |
Q |
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| T |
47122823 |
gagatgaaacatgtatattaaagataaattagcaaatgtagcttgtagcaaaagcgtctcttatatgaatgtgtgaatatcatttcttgaccattttgat |
47122724 |
T |
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| Q |
114 |
tataagtacttaggcttgcaaggtaattttcaatttgatgtggatttttaagtttttataagaaaataattttatttgagataaaacaatttgttaaagg |
213 |
Q |
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| T |
47122723 |
tataagtacttaggcttgcaaggtaattttcaatttgatgtggatttttaagtttttataagaaaataattttatttgagataaaacaatttgttaaagg |
47122624 |
T |
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| Q |
214 |
attatataaatttatccggaggatgatatttgagtcagagaagtatatggacactacagaatacaaataatatacttttaatcacttgtttagggactta |
313 |
Q |
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| T |
47122623 |
attatataaatttatccggaggatgacattggagtcagagaagtatatggacactacataatacaaataatatacttttagtcactcgtttaaggactta |
47122524 |
T |
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| Q |
314 |
aaaatgtannnnnnnnatttgtatggactacaaagtggatacaaagactaaaaacaaaattcactatatttgta-gaacccaaaactaattta------- |
405 |
Q |
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| T |
47122523 |
aaaatgtatttttgta--ttgtatggactacaaaatggatacaaagattaaaaacaaaattcactatatttgtaggaacccaaaactaatttaatcttat |
47122426 |
T |
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| Q |
406 |
----------accaaattatgtaaaagtagagatcaaaccaacatggtaatgactataatgatatctttgataaaatgatacacgagtaataggcacaca |
495 |
Q |
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| T |
47122425 |
ttaaaaaagtaccaaattatgtaaaagtagagatcaaaccaacatggtaatgactataatgatatctttgataaaatgatacacaagtaataggcacaca |
47122326 |
T |
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| Q |
496 |
actactaggaatataaacctaatacggtc--ctataagta-agtgatataatgatga |
549 |
Q |
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| T |
47122325 |
actactaggaatataaacctaatacggtcctctataagtatagtgatataatgatga |
47122269 |
T |
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