View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3979_low_12 (Length: 339)
Name: NF3979_low_12
Description: NF3979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3979_low_12 |
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| [»] scaffold0178 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 42022838 - 42022513
Alignment:
| Q |
1 |
caatggatctctctagatccttttagagagcatgattcatcacctaatataacttggacttatactatcctaatggacctatcttagatcattacacaga |
100 |
Q |
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||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42022838 |
caatggaactctctagatccttctagagagcatgactcatcacctaatataacttgaacttatactattctaatggacctatcttagatcattacacaga |
42022739 |
T |
|
| Q |
101 |
tcctctcctacgagattttaaaagattaggtttggatcctctcgtacgatttatctatatannnnnnncctctaacttcctcttaaaaattctctctttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42022738 |
tcctctcctacgagattttaaaagattaggtttgaatcctctcgtacgatttatctatatattttttcgctctaacttcctcttaaaaattctctctttc |
42022639 |
T |
|
| Q |
201 |
ataatcatcttttcattttccctcttattctccctcatctcactcacattatttttgttggagaatgatgcaagaagcataagaggatccaagttctaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42022638 |
ataatcatcttttcattttccctcttattctccctcgtctcactcacattatttttgttggagaatgatgcaagaagcataagaggatccaagttctaaa |
42022539 |
T |
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| Q |
301 |
ttgaccttgatatcgtttttatcttc |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42022538 |
ttgaccttgatatcgtttttatcttc |
42022513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 41364659 - 41364575
Alignment:
| Q |
10 |
tctctagatccttttagagagcatgattcatcacctaatataacttggacttatactatcctaatggacctatcttagatcatta |
94 |
Q |
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||||||||||||| || ||||||||| |||||| ||||||||||||||||||| ||||| ||||||| |||||| |||||||||| |
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| T |
41364659 |
tctctagatccttctaaagagcatgactcatcatctaatataacttggacttacactattctaatgggcctatcatagatcatta |
41364575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 6182 - 6090
Alignment:
| Q |
5 |
ggatctctctagatccttttagagagcatgattcatcacctaatataacttggacttatactatcctaatggacctatcttagatcattacac |
97 |
Q |
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|||||| | |||||| |||||||||| |||| |||||||||||||||||||| ||||||||||| ||||| | ||| |||||||| ||||||| |
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| T |
6182 |
ggatctttttagatcattttagagagtatgactcatcacctaatataacttgaacttatactattctaataggcctttcttagattattacac |
6090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 6710 - 6761
Alignment:
| Q |
45 |
taatataacttggacttatactatcctaatggacctatcttagatcattaca |
96 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
6710 |
taatataacttggacttatactattctaatggatctatcttagatcattaca |
6761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 44512467 - 44512408
Alignment:
| Q |
37 |
tcatcacctaatataacttggacttatactatcctaatggacctatcttagatcattaca |
96 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |
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| T |
44512467 |
tcatcacctaatataacttggacttataatattctaatggacctatcttgaatcattaca |
44512408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 36866177 - 36866091
Alignment:
| Q |
10 |
tctctagatccttttagagagcatgattcatcacctaatataacttggacttatactatcctaatggacctatcttagatcattaca |
96 |
Q |
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||||||||||||| | |||||| ||| | |||||||||||||||||| ||||||| || |||| || | ||||||||||||||||| |
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| T |
36866177 |
tctctagatccttcttgagagcctgactgatcacctaatataacttgaacttatatcattctaacgggcatatcttagatcattaca |
36866091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 668077 - 668125
Alignment:
| Q |
48 |
tataacttggacttatactatcctaatggacctatcttagatcattaca |
96 |
Q |
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||||||||||||||||| ||| |||||| ||||||||||||| ||||| |
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| T |
668077 |
tataacttggacttatattattataatgggcctatcttagatcgttaca |
668125 |
T |
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