View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3979_low_13 (Length: 332)
Name: NF3979_low_13
Description: NF3979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3979_low_13 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 162 - 328
Target Start/End: Complemental strand, 268202 - 268036
Alignment:
| Q |
162 |
aacaaagtaacatatattacgaactttagctttgaatgttgtttcaacattgattgatgaaatatcctatttgttcaaatagtggtccatctttgcttgg |
261 |
Q |
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| T |
268202 |
aacaaagtaacatatattacgaactttagctttgaatgttgtttcaacattgattgatgaaatatcctatttgttcaaatagtggtccatctttgcttgg |
268103 |
T |
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| Q |
262 |
ctccaatagttccatcccatgaaaaccttccccaaagtattccacaacatcaacccctttgcttctc |
328 |
Q |
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| T |
268102 |
ctccaatagttccatcccatgaaaaccttccccaaagtattccacaacatcaacccctttgcttctc |
268036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 162 - 328
Target Start/End: Complemental strand, 277904 - 277738
Alignment:
| Q |
162 |
aacaaagtaacatatattacgaactttagctttgaatgttgtttcaacattgattgatgaaatatcctatttgttcaaatagtggtccatctttgcttgg |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
277904 |
aacaaagtaacatatattacgaactttagctttgaatgttgtttcaacattgattaatgaaatatcctatttgttcaaatagtggtccatctttgcttgg |
277805 |
T |
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| Q |
262 |
ctccaatagttccatcccatgaaaaccttccccaaagtattccacaacatcaacccctttgcttctc |
328 |
Q |
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| T |
277804 |
ctccaatagttccatcccatgaaaaccttccccaaagtattccacaacatcaacccctttgcttctc |
277738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22261427 - 22261378
Alignment:
| Q |
1 |
atttactccaagtttttatttatgtatcttttctccttcaatttatataa |
50 |
Q |
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| T |
22261427 |
atttacttcaagtttttatttatgtttcttttctctttcaatttatataa |
22261378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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