View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3979_low_15 (Length: 316)
Name: NF3979_low_15
Description: NF3979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3979_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 6948072 - 6947793
Alignment:
| Q |
18 |
ctttcaatgaaagctctagcagacatgatcaaggataagaagccggaggagattagtaagattttcaacattgtgaatgcttaccgtcccgaggaagatg |
117 |
Q |
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| T |
6948072 |
ctttcaatgaaagctctagcagacatgatcaaggataagaagccggaggagattagtaagattttcaacattgtgaatgcttaccgtcccaaggaagatg |
6947973 |
T |
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| Q |
118 |
aggaagttcgtcgtgaaaatcaatgcacttttgaaaactgattagagtctagggtttagtctctaaaactttatatggttaagatagttaagaggccact |
217 |
Q |
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| T |
6947972 |
aggaagttcgttgtgaaaatcaatgcacttttgaaaactgattagagtctagggtttagtctctaaaactttatatggtt---------aagaggccact |
6947882 |
T |
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| Q |
218 |
gcttttgttgattattatattttaacatgggattttttgttacacttcgttttcatcatgaaaagaactgcattgtagatttacctatgct |
308 |
Q |
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| T |
6947881 |
gc-tttgttgattattatattttaacatgggatattatgttacgcttcgttttcatcatg-aaagaactgcattgtagatttacctatgct |
6947793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 204 - 308
Target Start/End: Complemental strand, 6950367 - 6950264
Alignment:
| Q |
204 |
gttaagaggccactgcttttgttgattattatattttaacatgggattttttgttacacttcgttttcatcatgaaaagaactgcattg-tagatttacc |
302 |
Q |
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| T |
6950367 |
gttaagagaccactgcttt-gttgtttattatattttaacatgggatattatgttacgcttcgttttcatcatg-aaagaactgcattgttagatttatc |
6950270 |
T |
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| Q |
303 |
tatgct |
308 |
Q |
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| T |
6950269 |
tatgct |
6950264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 11160847 - 11160986
Alignment:
| Q |
34 |
tagcagacatgatcaaggataagaagccggaggagattagtaagattttcaacattgtgaatgcttaccgtcccgaggaagatgaggaagttcgtcgtga |
133 |
Q |
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| T |
11160847 |
tagcagacatgatcaagggtaggacgccggaggagattcgtaagactttcaacattattaatgattacactccggaggaagaggaggaagtccgtagcga |
11160946 |
T |
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| Q |
134 |
aaatcaatgcacttttgaaaactgattagagtctagggtt |
173 |
Q |
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| T |
11160947 |
aactcaatgggcttttgacgaatgattagagtctagggtt |
11160986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 11179163 - 11179071
Alignment:
| Q |
45 |
atcaaggataagaagccggaggagattagtaagattttcaacattgtgaatgcttaccgtcccgaggaagatgaggaagttcgtcgtgaaaat |
137 |
Q |
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| T |
11179163 |
atcaaggacaagacaccagaggagattcgcaagattttcaacattaagaatgattacaccccagaggaagaggaggaagttcgtcgcgaaaat |
11179071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 182
Target Start/End: Complemental strand, 6950411 - 6950380
Alignment:
| Q |
151 |
aaaactgattagagtctagggtttagtctcta |
182 |
Q |
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| T |
6950411 |
aaaactgattagagtctagggtttagtctcta |
6950380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 52791857 - 52791795
Alignment:
| Q |
34 |
tagcagacatgatcaaggataagaagccggaggagattagtaagattttcaacattgtgaatg |
96 |
Q |
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| T |
52791857 |
tagcaaacatgatcaagggtaagacgccggaggagatttgcaaggctttcaacattgagaatg |
52791795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 662100 - 661917
Alignment:
| Q |
18 |
ctttcaatgaaagctctagcagacatgatcaaggataagaagccggaggagattagtaagattttcaacattgtgaatgcttaccgtcccgaggaagatg |
117 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||| ||| |||| | |
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| T |
662100 |
ctttcaatcaagactctagcagacatgatcaaggataagaagccggaggatattggtaagattttcaacattataaatgcttaccgtccggagtaagagg |
662001 |
T |
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| Q |
118 |
aggaagttcgtcgtgaaaatcaatgcacttttgaaaactgattagagtctagggtttagtctctaaaactttatatggttaaga |
201 |
Q |
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| T |
662000 |
atgaagtttgtcgtgaaaatcaatgcacttttgaaaactaattagagtctagggtttagtctctaaaattttatatggttaaga |
661917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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