View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3979_low_2 (Length: 552)
Name: NF3979_low_2
Description: NF3979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3979_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 227 - 538
Target Start/End: Original strand, 3477986 - 3478292
Alignment:
| Q |
227 |
tttctcaaaaccaagaaaatttcacggatttgtctcggttggcttagtccttagttaacaaatgtacatatattagccagatcaagttaaggataaaaca |
326 |
Q |
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| T |
3477986 |
tttctcaaaaccaagaaaatttcacggatttgtctcggttggcttagtccttagttaacgaatgtacatatattagccagatcaagttaaggataaaaaa |
3478085 |
T |
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| Q |
327 |
gacaatgatccaaatgtgttttctgtgatatgtatttgtcttggtgcagattgcaattaacattgaatacaactacaaggattatttttaaacaaacact |
426 |
Q |
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| T |
3478086 |
gacaatgatccaaatgtgttttctgtcatatgtatttgtcttggtgcagattgcaattaacattgaa------tacaaggattatttttaaacaaacact |
3478179 |
T |
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| Q |
427 |
tcactcttaacaatcacaagtactttgggaaccatgactatgtctaacatggacaaacatcttaagttcttaatta-tttcattgaccaacatttgagat |
525 |
Q |
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| T |
3478180 |
tcactcttaacaatcacaagtactttgggaaccatggctatgtctaacatggacaaacatcttaagttcttaattattttcattgaccaacatttgagat |
3478279 |
T |
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| Q |
526 |
catcatttcatat |
538 |
Q |
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| T |
3478280 |
catcatttcatat |
3478292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 3477714 - 3477936
Alignment:
| Q |
7 |
tgtatttcaagtgggaggaatattgtgaaacaactcaggaagttgatttggctcaaacttttcgaaaagcaaacaaatgtaaagactctttaggtagctt |
106 |
Q |
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| T |
3477714 |
tgtatttcaagtgggaggaatattgtgaaacaactcaggaagttgatttggctcaaacttttcgaaaagcaaacaaatgtaaagactctctgggtagctt |
3477813 |
T |
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| Q |
107 |
gagatatataatttagaggtttctttgatgatctatgagtttcgtcgtcctcagttcaattaattgttgttaatcactgatgttttgggagtttctactc |
206 |
Q |
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| T |
3477814 |
gagatatataatttagaggtttcgttgatgatctatgagtttcatcgtcctcaattcaattaattgttgttaatcactgatgttttgggagtttctactc |
3477913 |
T |
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| Q |
207 |
tcaatgtagcaggtttgtagttt |
229 |
Q |
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| T |
3477914 |
tcaatgtagcaggtttgtagttt |
3477936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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