View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3979_low_6 (Length: 454)

Name: NF3979_low_6
Description: NF3979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3979_low_6
NF3979_low_6
[»] chr6 (4 HSPs)
chr6 (104-438)||(22261451-22261795)
chr6 (136-282)||(6119071-6119218)
chr6 (165-221)||(373446-373502)
chr6 (165-221)||(35128800-35128856)
[»] chr2 (6 HSPs)
chr2 (165-221)||(18511286-18511342)
chr2 (165-221)||(1110245-1110301)
chr2 (165-221)||(4964750-4964806)
chr2 (165-221)||(15508961-15509017)
chr2 (209-301)||(41546022-41546117)
chr2 (212-301)||(42579652-42579743)
[»] chr1 (2 HSPs)
chr1 (165-221)||(41918042-41918098)
chr1 (165-221)||(32848660-32848716)
[»] chr4 (3 HSPs)
chr4 (182-301)||(5545642-5545763)
chr4 (169-221)||(2088742-2088794)
chr4 (165-221)||(42862498-42862554)
[»] scaffold0099 (1 HSPs)
scaffold0099 (165-221)||(27360-27416)
[»] chr8 (2 HSPs)
chr8 (165-221)||(6387608-6387664)
chr8 (165-221)||(11962758-11962814)
[»] chr7 (1 HSPs)
chr7 (165-221)||(19494416-19494472)
[»] chr5 (1 HSPs)
chr5 (165-221)||(24990933-24990989)
[»] chr3 (1 HSPs)
chr3 (165-221)||(13809128-13809184)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 104 - 438
Target Start/End: Original strand, 22261451 - 22261795
Alignment:
Q  104 ttataaaaataagatgaatactaacaaaactcttttttcaacaatgtcttaaacattcttattttattgagtaaaatcaatgtatgtcacactattttat 203  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | |||||| || |||||||||||||||||||| ||||||    
T  22261451 ttataaaaataagatgaatactaacaacactcttttttcaacaatgtcttaaacactcttctcttattgggtgaaatcaatgtatgtcacactgttttat 22261550  T
Q  204 gtagattccattttcaaaacgtaaaatccatatcgatttaggtcaattaaaaagtgaatattaaagagtgtttaaaagagagtgtagctaacactacttc 303  Q
    |||| || |||||||||||||||  ||||||||||||||||  |||||| ||||||| |||||||||||||||||||||||||||||||||||||| | |    
T  22261551 gtaggtttcattttcaaaacgtaggatccatatcgatttagaccaattacaaagtgagtattaaagagtgtttaaaagagagtgtagctaacactattcc 22261650  T
Q  304 aaaa----------atttaaaaattcattattcctctatcaaaacatgacagaaattatcaatgcacttgcaaactagaggatatgatgctgttggacat 393  Q
    ||||          |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22261651 aaaaataattatgtatttaagaattcattattccgctatcaaaacatgacagaaattatcaatgcacttgcaaactaaaggatatgatgctgttggacat 22261750  T
Q  394 tctttgtcagaaacgcagataaagggagctgttttgtcaaataag 438  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||    
T  22261751 tctttgtcagaaacgcatataaagggagctgctttgtcaaataag 22261795  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 282
Target Start/End: Original strand, 6119071 - 6119218
Alignment:
Q  136 ttttttcaacaatgtcttaaacattc-ttattttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaaacgtaaaatccat 234  Q
    ||||||||||| | ||| ||||| || || |||||||||||||||||||| ||| || ||| || |||||||||||| ||||||||| ||||  |  ||     
T  6119071 ttttttcaacactatctcaaacactcgttcttttattgagtaaaatcaatatatatcgcaccatcttatgtagattctattttcaaaccgtaggacacac 6119170  T
Q  235 atcgatttaggtcaattaaaaagtgaatattaaagagtgtttaaaaga 282  Q
    || |||||| || ||||||||| | | |||| ||||||||| ||||||    
T  6119171 attgatttaagttaattaaaaaataagtatttaagagtgttcaaaaga 6119218  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 373446 - 373502
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    |||||||| |||||||||||||||||| ||  | ||||||| |||||||||||||||    
T  373446 ttttattgggtaaaatcaatgtatgtcccagcactttatgtggattccattttcaaa 373502  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 35128856 - 35128800
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    |||||||| |||||||||||||||||| ||| | ||||||| | |||||||||||||    
T  35128856 ttttattgggtaaaatcaatgtatgtcccaccactttatgtgggttccattttcaaa 35128800  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 18511342 - 18511286
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    ||||||||  ||||||||||||||||| ||||||||||||| | ||| |||||||||    
T  18511342 ttttattggataaaatcaatgtatgtcccactattttatgtgggttcaattttcaaa 18511286  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 1110245 - 1110301
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    ||||||||||| ||||||||||||||| ||| | ||||||| | |||||||| ||||    
T  1110245 ttttattgagtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaa 1110301  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 4964806 - 4964750
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    |||||||| || ||||||||||||||| ||| | ||||||| |||| ||||||||||    
T  4964806 ttttattgggtgaaatcaatgtatgtcccaccactttatgtggatttcattttcaaa 4964750  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 15508961 - 15509017
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    ||||||||||| ||||||||||||||| ||| ||||| ||| | |||||||| ||||    
T  15508961 ttttattgagtgaaatcaatgtatgtcccaccattttttgtgggttccatttccaaa 15509017  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 41546117 - 41546022
Alignment:
Q  209 ttccattttcaaaacgtaaaatccatatcgatttaggtcaatta-aaaagtgaatattaa--agagtgtttaaaagagagtgtagctaacactact 301  Q
    |||||||||||||||||| || ||| || |||||| |||||||| ||||| || ||||||  | ||||||||||| | ||||| |||| |||||||    
T  41546117 ttccattttcaaaacgtagaacccacattgatttaagtcaattagaaaagcgagtattaaatatagtgtttaaaataaagtgttgctagcactact 41546022  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 42579743 - 42579652
Alignment:
Q  212 cattttcaaaacgtaaaatccatatcgatttaggtcaattaaaaagtgaatatt--aaagagtgtttaaaagagagtgtagctaacactact 301  Q
    ||||||||||||||| ||  ||||| |||||| |||||||| | ||||| | ||  ||||||||||||||||| ||||| |||  |||||||    
T  42579743 cattttcaaaacgtataactcatattgatttaagtcaattagagagtgagttttagaaagagtgtttaaaagaaagtgttgctggcactact 42579652  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 41918042 - 41918098
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    |||||||| || ||||||||||||||| ||| | ||||||| |||||||||||||||    
T  41918042 ttttattgggtgaaatcaatgtatgtcccaccactttatgtggattccattttcaaa 41918098  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 32848716 - 32848660
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    |||||||| || |||||| |||||||| ||| | ||||||| |||||||||||||||    
T  32848716 ttttattgggtgaaatcattgtatgtcccaccactttatgtggattccattttcaaa 32848660  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 301
Target Start/End: Original strand, 5545642 - 5545763
Alignment:
Q  182 aatgtatgtcacactattttatgtagattccattttcaaaacgtaaaatccatatcgatttaggtcaattaaaaagtgaatatt--aaagagtgtttaaa 279  Q
    |||||||||| ||| | ||||||| |  ||||||||||||| |||| | ||| || |||||| |  ||||||||||| | ||||  | |||||||| |||    
T  5545642 aatgtatgtcccaccactttatgtgggctccattttcaaaatgtaagacccacattgatttaagcaaattaaaaagtaagtattagagagagtgttcaaa 5545741  T
Q  280 agagagtgtagctaacactact 301  Q
    ||||||||| ||||| ||||||    
T  5545742 agagagtgttgctaaaactact 5545763  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 2088794 - 2088742
Alignment:
Q  169 attgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    ||||||| ||||||||||||||| ||| | ||||||| |||||||||| ||||    
T  2088794 attgagtgaaatcaatgtatgtcccaccactttatgtggattccatttccaaa 2088742  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 42862554 - 42862498
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    |||||||| || ||||||||||||||| ||| | ||||||| | |||||||||||||    
T  42862554 ttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccattttcaaa 42862498  T

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Target: scaffold0099 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 27360 - 27416
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    |||||||| || |||||||| |||||| ||| | ||||||||| |||||||||||||    
T  27360 ttttattgggtgaaatcaatatatgtcccaccactttatgtaggttccattttcaaa 27416  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 6387608 - 6387664
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    ||||||||  ||||||||||||||||| ||| ||||||||| | |||||||| ||||    
T  6387608 ttttattggataaaatcaatgtatgtcccaccattttatgtgggttccatttccaaa 6387664  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 11962814 - 11962758
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    ||||||||| ||||||||| |||| || ||| ||||||||||| ||| |||||||||    
T  11962814 ttttattgaataaaatcaaagtatatcccaccattttatgtaggttcaattttcaaa 11962758  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 19494472 - 19494416
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    |||||||| || ||||||||||||||| ||| | ||||||| | |||||||||||||    
T  19494472 ttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccattttcaaa 19494416  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 24990933 - 24990989
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    |||||||| || |||||||| |||||| ||| | ||||||||| |||||||||||||    
T  24990933 ttttattgggtgaaatcaatatatgtcccaccactttatgtaggttccattttcaaa 24990989  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 13809128 - 13809184
Alignment:
Q  165 ttttattgagtaaaatcaatgtatgtcacactattttatgtagattccattttcaaa 221  Q
    ||||||||  ||||||||||||||||| ||| ||||||||| | |||||||| ||||    
T  13809128 ttttattggataaaatcaatgtatgtcccaccattttatgtgggttccatttccaaa 13809184  T

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