View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3979_low_7 (Length: 451)
Name: NF3979_low_7
Description: NF3979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3979_low_7 |
 | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 26136976 - 26136552
Alignment:
| Q |
19 |
ccctctgtattctttctaaattggattgaccccctttgacaaaaaatacaagttatcaataagatgagttcacttgaagtttgtggtttgttgataaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26136976 |
ccctctgtattctttctaaattggattgaccccctttgacaaaaaatacaagttatcaataagatgagttcacttgaagtttgtggtttgttgataaaat |
26136877 |
T |
|
| Q |
119 |
ttagcgtagtatttagttacggtctatgtgacgttggttcaatagtaattacaatcagttcttgccaaagtattcttaaataatattatgtagttatgaa |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
26136876 |
ttagcgtagtatttaattacggtctatgtgacgctggttcaatagtaattacaatcggttcttgccaaagtattcttaaataatattaagttgttatgaa |
26136777 |
T |
|
| Q |
219 |
tattatggtttctttttctaaaaaataataac--atggta-nnnnnnngtttacgagttaatattatgatttaaaaaatgttatttatacaattggttcg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26136776 |
tattatggtttctttttctaaaaaataataacatatggtattttttttgtttacgagttaatattatgattt-aaaaatgttatttatacaattggttcg |
26136678 |
T |
|
| Q |
316 |
atcctggtttgatcttgatcagaccactaaatcttgtagtgtcgtcaataagttggtcctcagacaactaaatcttgaatagtgtcttcaatggttggtc |
415 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26136677 |
atcctagtttgatcttgatcagaccactaaatcttgtagtgtcatcaataagttggtcctcag-caactaaatcttgaataatgtcttcaatggttggtc |
26136579 |
T |
|
| Q |
416 |
cgattac-tttttgaagggttttatct |
441 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
26136578 |
cgattacttttttgaagggttttatct |
26136552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 26129070 - 26128999
Alignment:
| Q |
44 |
ttgaccccctttgacaaaaaatacaagttatcaataagatgagttcacttgaagtttgtggtttgttgataa |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
26129070 |
ttgaccccctttgacaaaaaattcaagttatcaataaaatgagtttacttgaagtttggggtttgttgataa |
26128999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 13636 - 13569
Alignment:
| Q |
375 |
tcagacaactaaatcttgaatagtgtcttcaatggttggtccgattactttttgaagggttttatctct |
443 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||| |||| ||| |||||| |||||||||| |||||||| |
|
|
| T |
13636 |
tcagactactaaatcttgaatggtgtctt-aatagttgctccaattactctttgaagggtattatctct |
13569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University