View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3979_low_9 (Length: 361)
Name: NF3979_low_9
Description: NF3979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3979_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 169 - 350
Target Start/End: Complemental strand, 376125 - 375944
Alignment:
| Q |
169 |
ccataaaagggtactggtgcttgattagttggctgctttagagggcaagtggaaataggaagcacagggagattttggcaattgcacatttcaatcatat |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
376125 |
ccataaaagggtactggtgcttgattagttggctgctttagagggcaagtggaaataggaagcacagggagattttggcaattgcacatttcaatcatat |
376026 |
T |
|
| Q |
269 |
atccatctggatcatgaaagaacaattgatcaacctgaattccaccatcctccacaactgctgttttatactcgatattcat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
376025 |
atccatctggatcatgaaagaacaattgatcaaccttaattccaccatcctccacaactgctgttttatactcaatattcat |
375944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 376280 - 376153
Alignment:
| Q |
18 |
tccttctcctgcaaaaacatgtccaatttggatataaattaagcttttcaatttcattgtagtaatcattggattaaatttaaacgaaacaaattaaaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
376280 |
tccttctcctgcaaaaacatgtccaatttggatataaattaagcttttcaatttcattgtagtaatcattggattaaatttaaacgaaaca----aaaga |
376185 |
T |
|
| Q |
118 |
aattaattaattaggagagttgagaagaaaac |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
376184 |
aattaattaattaggagagttgagaagaaaac |
376153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 44544811 - 44544876
Alignment:
| Q |
247 |
caattgcacatttcaatcatatatccatctggatcatgaaagaacaattgatcaacctgaattcca |
312 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||| ||||||||||| || ||||||||| |
|
|
| T |
44544811 |
caattgcatatttcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattcca |
44544876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 44555453 - 44555518
Alignment:
| Q |
247 |
caattgcacatttcaatcatatatccatctggatcatgaaagaacaattgatcaacctgaattcca |
312 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||| ||||||||||| || ||||||||| |
|
|
| T |
44555453 |
caattgcatatttcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattcca |
44555518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University