View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3980_high_2 (Length: 434)

Name: NF3980_high_2
Description: NF3980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3980_high_2
NF3980_high_2
[»] chr1 (10 HSPs)
chr1 (1-431)||(47712866-47713296)
chr1 (1-431)||(47759781-47760211)
chr1 (1-431)||(47717669-47718090)
chr1 (1-410)||(47745479-47745879)
chr1 (6-43)||(6523731-6523768)
chr1 (358-410)||(47704889-47704941)
chr1 (4-80)||(47778045-47778127)
chr1 (8-82)||(6521731-6521811)
chr1 (257-298)||(47811738-47811779)
chr1 (258-298)||(6521987-6522027)
[»] chr5 (2 HSPs)
chr5 (9-82)||(28875835-28875908)
chr5 (365-410)||(28830931-28830976)


Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 47713296 - 47712866
Alignment:
Q  1 caaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47713296 caaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccaatcaatatttggcattcttgaatggtcacc 47713197  T
Q  101 aaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatca 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  47713196 aaagttttatatgtcgaacccgaacaatgtaaccgaggtggatccatttaatcgagttcttggaaacttgatgaggaaactgagagaaatagctgcatca 47713097  T
Q  201 agtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713096 agtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcag 47712997  T
Q  301 agcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712996 agcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatat 47712897  T
Q  401 tagatatgaagtctatcgcttctctgatcct 431  Q
    |||||||||||||||||||||||||||||||    
T  47712896 tagatatgaagtctatcgcttctctgatcct 47712866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 47760211 - 47759781
Alignment:
Q  1 caaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| ||| || | ||| | |||||    
T  47760211 caaaactttgtccaaaccaaaaagaagcaattggttggtatgataactgcatgttgcgttactcaaaccgatcaatattcggcgttatggaaggttcacc 47760112  T
Q  101 aaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatca 200  Q
    ||||||||||||||  |||    | |||||||| |||||||||| |||||| | ||||||||| ||||||||||||||||| ||||| | ||||||||||    
T  47760111 aaagttttatatgtggaacatatataatgtaacagaggtggatcaatttaaccaagttcttgggaacttgatgaggaaactgaaagagaaagctgcatca 47760012  T
Q  201 agtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcag 300  Q
    ||||||||||||| ||| |||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  47760011 agtgattctcgtcgtaaatttgctacagataatgcaactgatgtaaatttgaattttcaaaccatatatggtcttgttcagtgcacacctgatttgtcag 47759912  T
Q  301 agcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatat 400  Q
    |||||||||||||| ||||||||||   |||||| ||||| ||||||| ||  ||| |||||||||||||| |||||||| |||||||||||||||||||    
T  47759911 agcaagattgcaataattgtttagatggtgctatctcagatattccaagttgttgtaataacaagattggtggtagagttctcaaaccaagttgtaatat 47759812  T
Q  401 tagatatgaagtctatcgcttctctgatcct 431  Q
     |||||||||  || | |||||| |||||||    
T  47759811 cagatatgaaacctctagcttctatgatcct 47759781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 47718090 - 47717669
Alignment:
Q  1 caaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcacc 100  Q
    |||||||||||||||||||||||||||| |||||||||||||  |||| |||||||||||||||||||||||||||||| ||| || | |||   |||||    
T  47718090 caaaactttgtccaaaccaaaaagaagcgattggttggtatgttgactgcatgttgcgttactcaaaccgatcaatattcggcgttatggaagcttcacc 47717991  T
Q  101 aaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatca 200  Q
        | ||  | ||  | |  ||| |||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  47717990 ttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttcttgggaacttgatgaggaaactcaaagaaatagcagcatca 47717891  T
Q  201 agtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcag 300  Q
    ||||||||||||| |||||||||| | | ||||||||||         ||||||||| |||||| |||||||||||||||||||||||||||||| |||     
T  47717890 agtgattctcgtcgtaagtttgctaccgctaatgcaact---------ttgaattttgaaaccacatatggtcttgtgcagtgtacacctgatttatcac 47717800  T
Q  301 agcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatat 400  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||| ||||| | | |||||||| ||||  ||| |||| ||||||||||||| |||||    
T  47717799 agcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttattttaataacaaggttggcggtatagttctcaaaccaagttgcaatat 47717700  T
Q  401 tagatatgaagtctatcgcttctctgatcct 431  Q
    |||| ||||| |||||  ||||| |||||||    
T  47717699 tagacatgaaatctattccttctatgatcct 47717669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 47745879 - 47745479
Alignment:
Q  1 caaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcacc 100  Q
    ||||||||||||||| |||||||||||||||| ||||||||||  ||| ||||||||||||||||||||||||||||||||||||| | ||    |||      
T  47745879 caaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgttgcgttactcaaaccgatcaatatttggcattatggatacttcatt 47745780  T
Q  101 aaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatca 200  Q
        | ||||| ||  |||   |  ||||||||||| |||| || |||||||| ||||||||| ||||||||||||||||| || |||||||||||||||    
T  47745779 ttcatattataagtggaacaatagaaatgtaaccgatgtggctcaatttaatcaagttcttgggaacttgatgaggaaactcaatgaaatagctgcatca 47745680  T
Q  201 agtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcag 300  Q
     |||||||||||| |||||||||| | | ||||||||||         ||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  47745679 ggtgattctcgtcgtaagtttgctaccgctaatgcaact---------ttgaattttgaaaccatatatggtcttgtgcagtgtacacctgacttgtcag 47745589  T
Q  301 agcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatat 400  Q
      ||||||||||||||||||||||||  |||||| ||||||| ||||| ||  | |||||||||||||||| |||||||| |||||| ||||||||||||    
T  47745588 gacaagattgcaatgattgtttagagcgtgctatttcagaaactccaagttttttttataacaagattggtggtagagttctcaaactaagttgtaatat 47745489  T
Q  401 tagatatgaa 410  Q
    ||||||||||    
T  47745488 tagatatgaa 47745479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 6523731 - 6523768
Alignment:
Q  6 ctttgtccaaaccaaaaagaagcaattggttggtatga 43  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6523731 ctttgtccaaaccaaaaagaagcaattggttggtatga 6523768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 410
Target Start/End: Complemental strand, 47704941 - 47704889
Alignment:
Q  358 ataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 410  Q
    |||||||||||||| | |||||| ||||||||||||| |||||||||||||||    
T  47704941 ataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaa 47704889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 47778045 - 47778127
Alignment:
Q  4 aactttgtccaaaccaaaaagaagcaattggttggtatgagg------actacatgttgcgttactcaaaccgatcaatattt 80  Q
    |||||||||||||| |||| ||||||||||||||||| ||||      | | |||||||||||||||| |||| |||||||||    
T  47778045 aactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatattt 47778127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 6521731 - 6521811
Alignment:
Q  8 ttgtccaaaccaaaaagaagcaattggttggta------tgaggactacatgttgcgttactcaaaccgatcaatatttgg 82  Q
    ||||| ||||| ||||||||||||||| |||||      ||| || | ||||||||||||||||||||| |||||||||||    
T  6521731 ttgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttgg 6521811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 47811738 - 47811779
Alignment:
Q  257 tcaaaccatatatggtcttgtgcagtgtacacctgatttgtc 298  Q
    |||||| ||| |||||||||| ||||||||||||||||||||    
T  47811738 tcaaacaataaatggtcttgttcagtgtacacctgatttgtc 47811779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 6521987 - 6522027
Alignment:
Q  258 caaaccatatatggtcttgtgcagtgtacacctgatttgtc 298  Q
    |||||||||||||||||||| || || ||||||||||||||    
T  6521987 caaaccatatatggtcttgttcaatgcacacctgatttgtc 6522027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 28875908 - 28875835
Alignment:
Q  9 tgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttgg 82  Q
    |||||| ||| |||||||||||||||||||  |||  ||| |||| |||||||||||| ||| |||||||||||    
T  28875908 tgtccataccgaaaagaagcaattggttggattgacaactgcatgctgcgttactcaagccggtcaatatttgg 28875835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 410
Target Start/End: Complemental strand, 28830976 - 28830931
Alignment:
Q  365 gattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 410  Q
    |||||||  ||||||| | |||||||||||||||||||||||||||    
T  28830976 gattggtgctagagttatgaaaccaagttgtaatattagatatgaa 28830931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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