View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3981_high_1 (Length: 524)
Name: NF3981_high_1
Description: NF3981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3981_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Complemental strand, 30425738 - 30425241
Alignment:
| Q |
18 |
aatctgacattggggagaaaataatgcgatgtgtcaagtctaaattaaaagttacacaatggataaaagagtagatattgaataatagtatataagtgag |
117 |
Q |
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| T |
30425738 |
aatctgacattggggagaaaatgatgcgatgtgtcaagtctaaattaaaagttacacaatggataaaagggtagatattgaataatagtatataagtgag |
30425639 |
T |
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| Q |
118 |
aatacatgtatatcaaatgaaaaatgctacttggtgcgaatgaaaattcgtgaaaaacttatgaatagcctgtagcaaccatttcttaatactttagtca |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||| ||||||||||||||||||||||| ||||||||| |
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| T |
30425638 |
aatacatgtatatcaaatgaaaaatgctacttgatgcgaatgaaaattcgtgaaaaacctacgaatggcctgtagcaaccatttcttaatgctttagtca |
30425539 |
T |
|
| Q |
218 |
ttttagacacactcatttatttcgaagcttcaactctatctcatacacatatttagtgacaaattttgaatgaatatattcgcatataaaaagttgcaat |
317 |
Q |
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|| ||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30425538 |
ttctagacacactcatttgtttcgaagcttcacctctatctcatacacatattcagtgacaaattttgaatgaatatattcgcatataaaaagttgcaat |
30425439 |
T |
|
| Q |
318 |
tagctactcatatagtacaaaaatacatgaaagacataacattgtaatattagagaaaagacatttgcttttttgttaatgtgatgctttgatgggttaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30425438 |
tagctactcatatagtacaaaaatacatgaaagacataacattgtaatattagagaaaagacatttgcttttttgttaatgtgatgctttgatgggttaa |
30425339 |
T |
|
| Q |
418 |
tgatcatatgattgtcttataatataaaatcatgggatgacagttgtcccttcaacacaatggtgctatgtaaaggtatagatgtgtcatttgatgat |
515 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30425338 |
tgctcatatgattgtcttataatataaaatcatgggatgacagttgtcccttcaacacaatggtgctatgtaaaggtatagatgtgtcatttgatgat |
30425241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 342
Target Start/End: Complemental strand, 30931723 - 30931653
Alignment:
| Q |
272 |
agtgacaaattttgaatgaatatattcgcatataaaaagttgcaattagctactcatatagtacaaaaata |
342 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||| |||| | ||| | |||||||| |
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| T |
30931723 |
agtgacaaattttgaatgaatttatttgcatataaaaagttgcaattagatacttagataatgcaaaaata |
30931653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 385595 - 385486
Alignment:
| Q |
278 |
aaattttgaatgaatatattcgcatataaaaagttgcaattagctactca---tatagtacaaaaatacatgaaagacataacattgtaatattagag-a |
373 |
Q |
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||||||||||||||| ||| | |||||||||||||||||||||||| | | |||||| ||||||||||| ||| ||||||||||||| || | || | |
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| T |
385595 |
aaattttgaatgaatttat-cacatataaaaagttgcaattagctattaatgttatagtgcaaaaatacattaaaaccataacattgtaaaatcaaagaa |
385497 |
T |
|
| Q |
374 |
aaagacatttg |
384 |
Q |
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||||||||||| |
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| T |
385496 |
aaagacatttg |
385486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 8357551 - 8357614
Alignment:
| Q |
254 |
tatctcatacacatatttagtgacaaattttgaatgaatatattcgcatataaaaagttgcaat |
317 |
Q |
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|||||||| ||| | || ||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
8357551 |
tatctcatccacgtgttcagtgacaaattttgaatgaatgtatttacatataaaaagttgcaat |
8357614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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