View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3981_low_2 (Length: 449)
Name: NF3981_low_2
Description: NF3981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3981_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 189 - 429
Target Start/End: Original strand, 16254499 - 16254740
Alignment:
| Q |
189 |
gtttagtttcttgaattatacaataaaaaata-aataaataagtggcatagaatcttactatcaaggccaaactgattcacagcccttggaaatttttgt |
287 |
Q |
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| T |
16254499 |
gtttagtttcttgaattatacaataaaaaaaataaaaaataagtggcatagaatcttactatcaaggccaaactgattcacagcccttagaaattcttgt |
16254598 |
T |
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| Q |
288 |
tgcattgcttgagaccattttaaacggttcttttttgttgggggttgataattatccttttccgccacatcaacatgagtttcttttgtgccattatcaa |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16254599 |
tgcattgcttgagaccattttaaacggttcttttttgttgggggttgataattatccttttcaaccacatcaacatgagtttcttttgtgccattatcaa |
16254698 |
T |
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| Q |
388 |
catgaatttgatcatgtttattttcattcatagatttccttg |
429 |
Q |
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| T |
16254699 |
catgaatttgatcatgtttattttcattcaaagatttccttg |
16254740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 46 - 299
Target Start/End: Original strand, 16251091 - 16251353
Alignment:
| Q |
46 |
aaacctgtaaatggctagcaatatgctcttttgtcaaaccaggaacattcatcacttcaataannnnnnnnggctttgcatctaaaaaataaattgatgg |
145 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |
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| T |
16251091 |
aaacctgtagatggctagcaatatgctctcttgtcaaaccaggaacattcatcacttcaaatattttttttggctttgcatctaaaaagtaaattgatgg |
16251190 |
T |
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| Q |
146 |
nnnnnnn---tgtacacaagtttagtttcttgaagtnnnnnnnnnn------gtttagtttcttgaattatacaataaaaaataaataaataagtggcat |
236 |
Q |
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| T |
16251191 |
aaaaaaaatgtgtacacaagtttagtttcttgaacttgtcaaaaaaaaaaaagtttagtttcttgaattatacaataaaaaataaataaataagtggcat |
16251290 |
T |
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| Q |
237 |
agaatcttactatcaaggccaaactgattcacagcccttggaaatttttgttgcattgcttga |
299 |
Q |
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| T |
16251291 |
agaatcttactatcaaggacaaactgattcacagcccttagaaattcttgatgcattgcttga |
16251353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 16254354 - 16254513
Alignment:
| Q |
17 |
aagaatcaaccaaattaatctnnnnnnncaaacctgtaaatggctagcaatatgctcttttgtcaaaccaggaacattcatcacttcaataannnnnnnn |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16254354 |
aagaatcaaccaaattaatctaaaaaaacaaacctgtaaatggctagcaatatgctcttttgtcaaaccaggaacattcatcacttcaataatttttttt |
16254453 |
T |
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| Q |
117 |
ggctttgcatctaaaaaataaattgatggnnnnnnntgtacacaagtttagtttcttgaa |
176 |
Q |
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| T |
16254454 |
ggctttgcatctaaaaaataaattgatggaaaaaaatgtacacaagtttagtttcttgaa |
16254513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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