View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3981_low_3 (Length: 363)
Name: NF3981_low_3
Description: NF3981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3981_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 36458679 - 36459025
Alignment:
| Q |
1 |
acaccgtaaattaaattacgtttaaaatcaacgccttgacgacgaagcaattcgatagagtctggattttgaagatcacgctccacgtcaaaatctttga |
100 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36458679 |
acaccgtaaattaaattacgtttaaaatcgatgccttgacgacgaagcaattcgatagagtctggattttgaagatcacggtccacgtcaaaatctttga |
36458778 |
T |
|
| Q |
101 |
aattaaattcccaaatatagctgtatgcatgatctccaggtaggttaccatttgcatcagtgagagtaagacctagttgaatcaacttgagattatccac |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36458779 |
aattaaattcccaaatatagctgtatgcaacatctccaggtaggttaccatttgcatcagtgagagtaagacctagttgaatcaagttgagattatccac |
36458878 |
T |
|
| Q |
201 |
gttagccttcaagaaactgtactgttctgatggatccatatggcggaggtgatacggtatattgggatcaaagttaggtgcaacgacgacaccaggaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36458879 |
gttagccttcaagaaactgtactgttctgatggatccatatggcggaggtgatacggtatattgggatcaaagttaggtgcaacgacgacaccaggaaac |
36458978 |
T |
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| Q |
301 |
tcggtatccattgatacatagggaaacatgtgaacgaaatttcttat |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36458979 |
tcggtatccattgatacatagggaaacatgtgaacgaaatctcttat |
36459025 |
T |
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