View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3981_low_6 (Length: 281)
Name: NF3981_low_6
Description: NF3981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3981_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 32062484 - 32062755
Alignment:
| Q |
10 |
gaagcaaaggatgacataaacaacatgtttgggaagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtg |
109 |
Q |
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| T |
32062484 |
gaagcaatggatgacataaacaacatgtttgggaagccaatagactttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaacaatagtg |
32062583 |
T |
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| Q |
110 |
gaaaggaattcggtgggttttcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggnnnnnnngatt |
209 |
Q |
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| T |
32062584 |
gaaaggaattcggtgggttttcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggaaaaaaagatt |
32062683 |
T |
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| Q |
210 |
aatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatga |
281 |
Q |
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| T |
32062684 |
aatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatga |
32062755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 32062652 - 32062758
Alignment:
| Q |
43 |
aagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttttcaatccttgccg |
142 |
Q |
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| T |
32062652 |
aagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcgg |
32062751 |
T |
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| Q |
143 |
atgatga |
149 |
Q |
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| T |
32062752 |
atgatga |
32062758 |
T |
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