View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3982_high_3 (Length: 236)
Name: NF3982_high_3
Description: NF3982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3982_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 27731271 - 27731066
Alignment:
| Q |
17 |
aatatgtatgaaagggctaatggtaatgaattaatggctcaatatgatggggaattgatggatgtagaggaactgagtctgatgcacgcggaacctgtct |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
27731271 |
aatatgtatggaagggctaatggtaatgatttaatggctcaatacgatggagaattgatggatgtagaggaactgaatctgatgcacgcggagcctgtct |
27731172 |
T |
|
| Q |
117 |
agcagggctttgtccctcagacaaatgacctgatcatgttgggagatggaaaagttctgaatcatagtggaagattacgactcgaggaaatggaagatga |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27731171 |
ggcagggctttgtccctcagacaaacgacctgatcatgttgggagatggaaaagttctgaatcatagtggaagatcacgactcgaggaaatggaagatga |
27731072 |
T |
|
| Q |
217 |
tcaaca |
222 |
Q |
| |
|
|||||| |
|
|
| T |
27731071 |
tcaaca |
27731066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 27711259 - 27711054
Alignment:
| Q |
17 |
aatatgtatgaaagggctaatggtaatgaattaatggctcaatatgatggggaattgatggatgtagaggaactgagtctgatgcacgcggaacctgtct |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||||||||||||| |
|
|
| T |
27711259 |
aatatgtatggaagggctaatggtaatgatttaatggctcaatatgacagggaattgatggacgtagaggaatgcaatctgatgcacgcggaacctgtta |
27711160 |
T |
|
| Q |
117 |
agcagggctttgtccctcagacaaatgacctgatcatgttgggagatggaaaagttctgaatcatagtggaagattacgactcgaggaaatggaagatga |
216 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
27711159 |
tgcagggatttttccctcagacaaacgacctgatcatgttgggagatggaatagttatgaatcatagtggaagatcacgactcgagcaaatggaagatga |
27711060 |
T |
|
| Q |
217 |
tcaaca |
222 |
Q |
| |
|
|||||| |
|
|
| T |
27711059 |
tcaaca |
27711054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University