View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3982_low_1 (Length: 445)
Name: NF3982_low_1
Description: NF3982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3982_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 71 - 436
Target Start/End: Complemental strand, 40444369 - 40444004
Alignment:
| Q |
71 |
acgtgtgtttcattgaatgaaaggagatttaattttaaaatttgtaaatgaattgcagaagaaggtgataaaaacaagaagtgtagagtacatgccattt |
170 |
Q |
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| T |
40444369 |
acgtgtgtttcattgaatgaaaggagatttaattttaaaatttgtaaatgaattgcagaagaaggtgataaaaacaagaagtgtagagtacatgccattt |
40444270 |
T |
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| Q |
171 |
ccattgtcattgtttcttactatctgtgccaccatgtggtttttctatggcttctttgacaaggataagtacattatggtaagtataaaatatatttaat |
270 |
Q |
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| T |
40444269 |
ccattgtcattgtttcttactatctgtgccaccatgtggtttttctatggcttctttgacaaggataagtacattatggtaagtataaaatatatttaat |
40444170 |
T |
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| Q |
271 |
ttactcatcctattaatgaatttttcttttatgatgtatggctgaaagcaataaaactgattaatgttttgtatttttctattattagctgccaaatggg |
370 |
Q |
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| T |
40444169 |
ttactcatcctattaatgaatttttcttttatgatgtatggctgaaagcaataaaactgattaatgttttgtatttttctattattagctgccaaatggg |
40444070 |
T |
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| Q |
371 |
ttgggatttttattaggcgtctctcaaatgatcttatacctcatatacaagaatgctaagaataat |
436 |
Q |
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| T |
40444069 |
ttgggatttttattaggcgtctctcaaatgatcttatacctcatatacaagaatgctaagaataat |
40444004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 40444454 - 40444402
Alignment:
| Q |
1 |
ggtatttgttctaatccaannnnnnnctagtagtgacgcaatctttttatcca |
53 |
Q |
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| T |
40444454 |
ggtatttgttctaatccaatttttttctagtagtgacgcaatctttttatcca |
40444402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 86 - 301
Target Start/End: Original strand, 1517136 - 1517350
Alignment:
| Q |
86 |
aatgaaaggagatttaattttaaaatttgtaaatgaattgcagaagaaggtgataaaaacaagaagtgtagagtacatgccatttccattgtcattgttt |
185 |
Q |
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| T |
1517136 |
aatgaaaagagatttaattt-aaaatttgtacatgaattgcagaggaaggtgataagaacaagaagtgttgagtacatgccattttctttatcattattt |
1517234 |
T |
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| Q |
186 |
cttactatctgtgccaccatgtggtttttctatggcttctttgacaaggataagtacattatggtaagtataaaatatatttaatttactcatcctatta |
285 |
Q |
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| T |
1517235 |
cttactctctgtgccaccatgtggtttttctatggtctctttgacaaggataactacattatggtgagtatataaaatatttaatttactcatcctatta |
1517334 |
T |
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| Q |
286 |
atgaatttttctttta |
301 |
Q |
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| T |
1517335 |
attaatttttctttta |
1517350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 1517446 - 1517524
Alignment:
| Q |
357 |
agctgccaaatgggttgggatttttattaggcgtctctcaaatgatcttatacctcatatacaagaatgctaagaataa |
435 |
Q |
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| T |
1517446 |
agctgccaaatgtgttaggatttctatttggtgtctctcaaatgatcttatacctcatatacaagaatgctaagaataa |
1517524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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