View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3982_low_3 (Length: 359)
Name: NF3982_low_3
Description: NF3982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3982_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 34554031 - 34554202
Alignment:
| Q |
1 |
atcactttccaccataagatgagaaagcttgnnnnnnn-gagtctcctagtgagaagttatccgaaatgatggaaagcttannnnnnngggagtctccta |
99 |
Q |
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| T |
34554031 |
atcactttccactataagatgagaaagcttgttttttacgagtctcctagtgagaagttatcagaaatgatggaaagcttatttttt-gggagtctccta |
34554129 |
T |
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| Q |
100 |
gtgagaagttgaatagcaacctcatggatagtttcttactttccttcgttttcttagggtgcctctccccaag |
172 |
Q |
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| T |
34554130 |
gtgagaagttgaatagcaacctcatggatagtttcttactttccttcgttttcttagggtgcctctccccaag |
34554202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 225 - 341
Target Start/End: Original strand, 34554248 - 34554368
Alignment:
| Q |
225 |
accaagtatagataagtggtttattcaccaaaaaacaatcacgtaaggatgtgcat----gttcatgaatgagggaagtcggaagatcgttacattacat |
320 |
Q |
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| T |
34554248 |
accaagtatagataagtggtttattcaccaaaaaacaatcatgtaaggatgtgcatgttagttcatgaatgagggaagtcggaaggtcgttacattacat |
34554347 |
T |
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| Q |
321 |
taatccaagcgaagctacata |
341 |
Q |
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| T |
34554348 |
gaatccaagcgaagctacata |
34554368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 34552362 - 34552437
Alignment:
| Q |
88 |
gggagtctcctagtgagaagttgaatagcaacctcatggatagtttcttactttccttcgttttcttagggtgcct |
163 |
Q |
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| T |
34552362 |
gggagtctcctagtgagaagttgaatagcatcctcatgcatagtttcttactttccttcgttttcttagggtgcct |
34552437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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