View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3982_low_4 (Length: 328)
Name: NF3982_low_4
Description: NF3982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3982_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 50153449 - 50153752
Alignment:
| Q |
1 |
tggatgaaacaaatcaatgaaggacttgctatgtaaattttaccaagacaaaccaaacaaaatgttcaagaaacatgtatatatagtag--tgggttcta |
98 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
50153449 |
tggatgaaacaaatcagtgaaggacttgctatgtaaattttaccaagacaaaccaaacaaaatgttcaataaacatgtatatatagtagagtgggttcta |
50153548 |
T |
|
| Q |
99 |
gtgactccataatgaatgagtataccgcctaatttttatctatgccttatttacaagctccttaaatcatttgtcggtctaaaggtttttctgttgtaga |
198 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||| ||||||||||||||| |
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| T |
50153549 |
gtgactccataatgaatgggtataccgcctaatttttatctatgccttatt-acaagctccttaaatcattggccagtctaaagctttttctgttgtaga |
50153647 |
T |
|
| Q |
199 |
acatatgtccttatttgaaacgtataaagtgaagaaaagcattcaaaaaagtactgataaaatgaagcttaggttgttaggctgtattcccaactatata |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50153648 |
acatatgtccttatttgaaacgtataaagtgaagaaaagcattcaaaaaagtactgataaaatgaagcttaggttgttaggctgtattcccaactatata |
50153747 |
T |
|
| Q |
299 |
ttgct |
303 |
Q |
| |
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||||| |
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| T |
50153748 |
ttgct |
50153752 |
T |
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