View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3982_low_5 (Length: 272)
Name: NF3982_low_5
Description: NF3982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3982_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 36108463 - 36108212
Alignment:
| Q |
1 |
aaattcaataaaatccaagtatttacaaagattacatttagtatggaccaagttatgatggactaaaactgactagaatgttttggaatgtctaaaaaag |
100 |
Q |
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| T |
36108463 |
aaattcaataaaatccaagtatttacaaagattacatttagtatggaccaagttatgatggactaaaactgactagaatgttttggaatgtctaaaaaag |
36108364 |
T |
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| Q |
101 |
gacatcgtttatattacatgtatgagaaagttaggtcattccattttatttccttgagttagatatgtgttttcccctgttaccagttggatccatctnn |
200 |
Q |
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|| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36108363 |
gaaatggtttatattatatgtatgagaaagttaggtcattccattttatttccttgagttagatatgtgttttcccctgttaccagttggatccatctaa |
36108264 |
T |
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| Q |
201 |
nnnnngaccaattttatctatgtagattattttattttgaatttattcttaa |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36108263 |
aaaaagaccaattttatctatgtagattattttattttgaatttattcttaa |
36108212 |
T |
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