View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3982_low_6 (Length: 242)
Name: NF3982_low_6
Description: NF3982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3982_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 33993955 - 33993734
Alignment:
| Q |
2 |
ataaatgactaactcggcatgaaaaatggtaataaaggattcatgatgcagttttgccaaacaaatagctttattcgaatcaagtttgcttctctaagca |
101 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33993955 |
ataaatgactaactcgacatgaaaaatggtaataaaggattcatgatgcagttttgccaaacaaatagctttattcgaatcaagtttgcttctctaagca |
33993856 |
T |
|
| Q |
102 |
catgccaatcacttcacgtcatttatttcccacaataataaaagttccacaaacattgtcaagaacaagcaagnnnnnnnnnnnnnnntaatagtccaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33993855 |
catgccaatcacttcacgtcatttatttcccacaataataaaagttccacaaacattgtcaagaacaagcaag--acacacacacacataatagtccaaa |
33993758 |
T |
|
| Q |
202 |
caaagtaacatttaaatgccttgt |
225 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33993757 |
caaagtaacatttaaatgccttgt |
33993734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University