View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3983_high_12 (Length: 253)
Name: NF3983_high_12
Description: NF3983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3983_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 20438088 - 20438305
Alignment:
| Q |
19 |
acacaagcagttagagcatacaatttgatttcatcgtagaataaacagacacgcacataggggcatcaattccatgcaacttcacattggaatataacac |
118 |
Q |
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| T |
20438088 |
acacaagcagttcgagcatacaatttgatttcatcgtagaataaacacacacgcacataggggcatccattccaatcaacttcacattgcaatataacac |
20438187 |
T |
|
| Q |
119 |
tccttcattatggatatgctca-------ttaaaactcactcattaagctttgatgacttaaatttatttaatggccaagaaaagctcagaaaagagctg |
211 |
Q |
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||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| || |||||| |||| ||||||||| || |
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| T |
20438188 |
tccttcactatggatatgcacattataagttaaaactcactcactaagctttgatgacttaaatttatttattgtgcaagaacagcttagaaaagagatg |
20438287 |
T |
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| Q |
212 |
tatcaatatcaatataaa |
229 |
Q |
| |
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|||||||||||||||||| |
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| T |
20438288 |
tatcaatatcaatataaa |
20438305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 20449056 - 20449251
Alignment:
| Q |
20 |
cacaagcagttagagcatacaatttgatttcatcgtagaataaacagacacgcacataggggcatcaattccatgcaacttcacattggaatataacact |
119 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
20449056 |
cacaagcagttcgagcatacaatttgatttcatcgtagaataaacagacacactcataggggcatcaattccaatcaacttcacattgcaatataacact |
20449155 |
T |
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| Q |
120 |
ccttcattatggatatgctca-------ttaaaactcactcattaagctttgatgacttaaatttatttaatggccaagaaaagctcagaaaagag |
208 |
Q |
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|||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||| |
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| T |
20449156 |
ccttcactatggatatgcacattataagttaaaactcactcactaagctttgatgacttaaatttatttattgtgcaagaacagctcagaaaagag |
20449251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 20460375 - 20460571
Alignment:
| Q |
19 |
acacaagcagttagagcatacaatttgatttcatcgtagaataaacagacacgcacataggggcatcaattccatgcaacttcacattggaatataacac |
118 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20460375 |
acacaagcagttcgagcatacaatctgatttcatcgtagaataaacagacacacacataggggcatcaattccaatcaacttcacattggaatataacac |
20460474 |
T |
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| Q |
119 |
tccttcattatggatatgctcattaaaactcactcattaagctttgatgacttaaatttatttaatggccaagaaaagctcagaaaagagctgtatcaat |
218 |
Q |
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|||| ||| |||||||||||||| |||||||||||||||||||| | |||| ||| |||||| |||||| ||||||||||||||||| |
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| T |
20460475 |
gcctt-------------ctc-ttaaaactcactcactaagctttgatgacttaaatatttttattgggcaagaacagctcaaaaaagagctgtatcaat |
20460560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 20277399 - 20277514
Alignment:
| Q |
114 |
aacactccttcattatggatatgctcattaaaactcactcattaagctttgatgacttaaatttatttaatggccaagaaaagctcagaaaagagctgta |
213 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||| |||||||||||| |
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| T |
20277399 |
aacactccttcattatggataagctcattaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaacagctcaaaaaagagctgta |
20277498 |
T |
|
| Q |
214 |
tcaatatcaatataaa |
229 |
Q |
| |
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|||||||||||||||| |
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| T |
20277499 |
tcaatatcaatataaa |
20277514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 20474652 - 20474759
Alignment:
| Q |
19 |
acacaagcagttagagcatacaatttgatttcatcgtagaataaacagacacgcacataggggcatcaattccatgcaacttcacattggaatataacac |
118 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||| |||||||||||| | ||||||||||||| |||||||||| |
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| T |
20474652 |
acacaagcagttcgagcatacaatttggtttcatcttagaataaacagaca--cacata-gggcatcaattcaaatcaacttcacattgcaatataacac |
20474748 |
T |
|
| Q |
119 |
tccttcattat |
129 |
Q |
| |
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||||||||||| |
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| T |
20474749 |
tccttcattat |
20474759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 20277356 - 20277402
Alignment:
| Q |
19 |
acacaagcagttagagcatacaatttgatttcatcgtagaataaaca |
65 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
20277356 |
acacaagcagttcgagcatacaatttgatttcatcatagaataaaca |
20277402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 20442078 - 20442140
Alignment:
| Q |
158 |
agctttgatgacttaaatttatttaatggccaagaaaagctcagaaaagagctgtatcaatat |
220 |
Q |
| |
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|||||||| |||| ||||||||| | ||| |||||| |||||| ||||||||||||||||||| |
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| T |
20442078 |
agctttgaagactaaaatttattgattgggcaagaacagctcaaaaaagagctgtatcaatat |
20442140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 283429 - 283466
Alignment:
| Q |
19 |
acacaagcagttagagcatacaatttgatttcatcgta |
56 |
Q |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
283429 |
acacaagaagttagagcatacaatttgatttcatcgta |
283466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 283511 - 283549
Alignment:
| Q |
141 |
ttaaaactcactcattaagctttgatgacttaaatttat |
179 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |
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| T |
283511 |
ttaaaactcactcacaaagctttgatgacttaaatttat |
283549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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