View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3983_high_4 (Length: 465)
Name: NF3983_high_4
Description: NF3983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3983_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 1167500 - 1167152
Alignment:
| Q |
16 |
atccaaatagaaaaagagtttaatggatgtgcattgatggtgtaaactagttttacactatcctccaataagaaccaccaccatgttgacaccttgtcat |
115 |
Q |
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| T |
1167500 |
atccaaatagaaaaagagtttaatggatgtgcattgatggtgtacactagttttacactatcctccaataagaaccatcaccatgttgacaccttgtcat |
1167401 |
T |
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| Q |
116 |
gtatgtctattttataaccgctttttgaaaataactatcaaatgctccattcttattgtatgtcagtgtaaaactagtttgactagtttacactgaccgt |
215 |
Q |
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| T |
1167400 |
gtatgtctattttataaccgctttttgaaaataactatcaaatgctccattcttattgtatgtcagtgtaaaactagtttgactagtttacactgaccgt |
1167301 |
T |
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| Q |
216 |
gcacgtcagtgtaaactttgagcccagagaaggtcatcacatgcctcactcctttcaactactaaaattataatgtaattgttaaaatggaaaccactaa |
315 |
Q |
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| T |
1167300 |
gcacgtcagtgtaaactttgagcccagagaaggtcatcgcatacctcactcctttcaactactaaaattataatgtaattgttaaaattgaaaccactaa |
1167201 |
T |
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| Q |
316 |
ttacacatgtttggattgccggtgagagtttgacgaaatcacagtagca |
364 |
Q |
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| T |
1167200 |
ttacacatgtttggactgcaggtgagagtttgacgaaatcacagtagca |
1167152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 393 - 448
Target Start/End: Complemental strand, 1167154 - 1167099
Alignment:
| Q |
393 |
gcaaaaatcacattggctcagaaccaatgaaaactctaccgaagtcaccaccaatc |
448 |
Q |
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| T |
1167154 |
gcaaaaatcacattggctcacaaccaatcaaaactctaccgaagtcaccaccaatc |
1167099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 42669911 - 42669978
Alignment:
| Q |
128 |
tataaccgctttttgaaaataactatcaaatgctccattcttattgtatgtcagtgtaaaactagttt |
195 |
Q |
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| T |
42669911 |
tataaccgatctttgaaaataactgtcaaatactcaattcatattggatgtcaatgtaaaactagttt |
42669978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 17128708 - 17128640
Alignment:
| Q |
127 |
ttataaccgctttttgaaaataactatcaaatgctccattcttattgtatgtcagtgtaaaactagttt |
195 |
Q |
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| T |
17128708 |
ttataaccgctttttgaaaataactacccagttcacaattctaattggacgtcaatgtaaaactagttt |
17128640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 39328637 - 39328555
Alignment:
| Q |
113 |
catgtatgtctattttataaccgctttttgaaaataactatcaaatgctccattcttattgtatgtcagtgtaaaactagttt |
195 |
Q |
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| T |
39328637 |
catgcatgtctattttataaccacttctttgaaataactaccaagtgctcaattctaattgggtttcagtgtaaaactagttt |
39328555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 17571218 - 17571181
Alignment:
| Q |
54 |
ggtgtaaactagttttacactatcctccaataagaacc |
91 |
Q |
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| T |
17571218 |
ggtgtaaaatagttttacactatcatccaataagaacc |
17571181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 45294858 - 45294774
Alignment:
| Q |
112 |
tcatgtatgtctattttataaccgctttttgaaaataactatcaaatgctccattcttattgtatgtcagtgtaaaactagtttg |
196 |
Q |
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| T |
45294858 |
tcatgtaagcctatattatcaccgctttttaaaaataactgtcacatactcaattcttgttggatgtcgttgtaaaactagtttg |
45294774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 1500144 - 1500200
Alignment:
| Q |
30 |
agagtttaatggatgtgcattgatggtgtaaactagttttacactatcctccaataa |
86 |
Q |
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| T |
1500144 |
agagtttaatggaggtgcaatcatggtgtaaaatagttttacaccatcagccaataa |
1500200 |
T |
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