View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3983_low_13 (Length: 248)

Name: NF3983_low_13
Description: NF3983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3983_low_13
NF3983_low_13
[»] chr5 (5 HSPs)
chr5 (38-107)||(9071877-9071946)
chr5 (14-97)||(2023399-2023482)
chr5 (14-97)||(183094-183178)
chr5 (14-93)||(16799829-16799908)
chr5 (38-97)||(38107220-38107279)
[»] chr8 (7 HSPs)
chr8 (29-107)||(45519387-45519465)
chr8 (38-88)||(14054210-14054260)
chr8 (38-96)||(39688436-39688494)
chr8 (38-97)||(26363500-26363559)
chr8 (38-88)||(4376277-4376327)
chr8 (38-88)||(35562335-35562385)
chr8 (38-71)||(26830418-26830451)
[»] chr7 (4 HSPs)
chr7 (38-106)||(40320505-40320573)
chr7 (38-88)||(35959176-35959226)
chr7 (38-71)||(17352983-17353016)
chr7 (39-107)||(37918420-37918488)
[»] chr1 (6 HSPs)
chr1 (42-107)||(22778533-22778598)
chr1 (38-107)||(1531729-1531798)
chr1 (38-97)||(31376623-31376682)
chr1 (28-71)||(43914989-43915032)
chr1 (14-80)||(43916181-43916247)
chr1 (29-107)||(29182379-29182457)
[»] chr2 (4 HSPs)
chr2 (40-107)||(21004541-21004608)
chr2 (14-71)||(3149155-3149212)
chr2 (38-107)||(30793940-30794009)
chr2 (38-88)||(30796155-30796205)
[»] scaffold0050 (1 HSPs)
scaffold0050 (38-83)||(80928-80973)
[»] chr4 (4 HSPs)
chr4 (38-107)||(46171371-46171440)
chr4 (14-64)||(10614869-10614919)
chr4 (38-96)||(22813193-22813251)
chr4 (38-83)||(22099018-22099063)
[»] chr6 (3 HSPs)
chr6 (40-96)||(21844265-21844321)
chr6 (14-102)||(3488100-3488188)
chr6 (41-77)||(19758338-19758374)
[»] chr3 (1 HSPs)
chr3 (38-88)||(37023722-37023772)
[»] scaffold0151 (1 HSPs)
scaffold0151 (38-86)||(38278-38326)


Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 9071946 - 9071877
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtatattttgaatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9071946 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtatattttgaatt 9071877  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 2023399 - 2023482
Alignment:
Q  14 tggcaaaagtaacaccatgtctatcccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtat 97  Q
    |||||||||| || |||| |||| ||||||||||||||  ||||||| |||||||||| |||||||| || |||| ||||||||    
T  2023399 tggcaaaagtgaccccatatctaccccttttgcaaaacgtcaattttaacttggtcaaccatatgtggcatgccacctgtgtat 2023482  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 183178 - 183094
Alignment:
Q  14 tggcaaaagtaacaccatgtctatccc-ttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtat 97  Q
    |||||||||| || ||||||||| ||| |||||||||||  |||||||||||  ||||||| |||||| ||||||| ||||||||    
T  183178 tggcaaaagtgaccccatgtctacccccttttgcaaaacgtcaattttgactcagtcaatcctatgtggcacgccacctgtgtat 183094  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 16799908 - 16799829
Alignment:
Q  14 tggcaaaagtaacaccatgtctatcccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgt 93  Q
    |||||||||| || ||| ||||| |||||||||||||   |||||||||||  ||||| |||||||| ||||||| ||||    
T  16799908 tggcaaaagtgaccccacgtctaccccttttgcaaaaggtcaattttgactcagtcaaccatatgtggcacgccacctgt 16799829  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 38107220 - 38107279
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtat 97  Q
    ||||||||||||||  ||||||||||| |||||| |||||||| || |||| ||||||||    
T  38107220 cccttttgcaaaacgtcaattttgactcggtcaaccatatgtggcatgccacctgtgtat 38107279  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 45519465 - 45519387
Alignment:
Q  29 catgtctatcccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtatattttgaatt 107  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||    
T  45519465 catgtctatcccttttgcaaaacaccaattttaacttggtcaatcatatatgtcacgccagctgtgtacattttgaatt 45519387  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 14054210 - 14054260
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgcca 88  Q
    ||||||||||||||||||||||||||||| |||| | ||||||||| ||||    
T  14054210 cccttttgcaaaacaccaattttgacttgatcaaacctatgtgtcatgcca 14054260  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 39688436 - 39688494
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgta 96  Q
    ||||||||||| || ||||| ||||||||||||||| |||||||| ||||| |||||||    
T  39688436 cccttttgcaatactccaatcttgacttggtcaatcctatgtgtctcgccacctgtgta 39688494  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 26363559 - 26363500
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtat 97  Q
    ||||||||||||||  |||||||||||  ||||| |||||||| ||||||| ||||||||    
T  26363559 cccttttgcaaaacgtcaattttgactcagtcaaccatatgtggcacgccacctgtgtat 26363500  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 4376277 - 4376327
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgcca 88  Q
    |||||||||||||||| |||||||||  |||||| | ||||||||||||||    
T  4376277 cccttttgcaaaacactaattttgaccgggtcaaacctatgtgtcacgcca 4376327  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 35562335 - 35562385
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgcca 88  Q
    ||||||| ||||||| |||||||||||||||||| | ||||||||| ||||    
T  35562335 cccttttacaaaacatcaattttgacttggtcaaacctatgtgtcatgcca 35562385  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 26830418 - 26830451
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaa 71  Q
    |||||||||||||| |||||||||||||||||||    
T  26830418 cccttttgcaaaaccccaattttgacttggtcaa 26830451  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 40320505 - 40320573
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtatattttgaat 106  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  40320505 cccttttgcaaaacatcaattttgacttggttaatcatatgtgtcacgccagctgtgtatatattgaat 40320573  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 35959176 - 35959226
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgcca 88  Q
    |||||||||||||||| |||||||||||| |||| | ||| ||||||||||    
T  35959176 cccttttgcaaaacactaattttgacttgatcaagcctatctgtcacgcca 35959226  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 17352983 - 17353016
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaa 71  Q
    |||||||||||||| |||||||||||||||||||    
T  17352983 cccttttgcaaaactccaattttgacttggtcaa 17353016  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 37918488 - 37918420
Alignment:
Q  39 ccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtatattttgaatt 107  Q
    |||||||||||||  ||||||||| |||||||||| ||  ||||| |||| |||||||| |||| ||||    
T  37918488 ccttttgcaaaacctcaattttgatttggtcaatcctacatgtcatgccaactgtgtattttttaaatt 37918420  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 22778598 - 22778533
Alignment:
Q  42 tttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtatattttgaatt 107  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  22778598 tttgcaaaacaccaattttgacttggtcaatcctatgtgtcacgccagctgtgtattttctgaatt 22778533  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 1531729 - 1531798
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtatattttgaatt 107  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| ||| ||||||| || ||||||    
T  1531729 cccttttgcaaaacaccaattttgacctggtcaatcctatgtgtcacgtcagttgtgtattttctgaatt 1531798  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 31376623 - 31376682
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtat 97  Q
    ||||||||||||||  |||||||||||  ||||| ||||||||||| |||| ||||||||    
T  31376623 cccttttgcaaaacctcaattttgactcagtcaaccatatgtgtcatgccacctgtgtat 31376682  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 43914989 - 43915032
Alignment:
Q  28 ccatgtctatcccttttgcaaaacaccaattttgacttggtcaa 71  Q
    ||||||||| ||||||||||||||  ||||||||||||||||||    
T  43914989 ccatgtctaccccttttgcaaaacgtcaattttgacttggtcaa 43915032  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 43916247 - 43916181
Alignment:
Q  14 tggcaaaagtaacaccatgtctatccc-ttttgcaaaacaccaattttgacttggtcaatcatatgtg 80  Q
    |||||||||| || ||||||||||||| |||||||||||  |||||||||||  ||||||||||||||    
T  43916247 tggcaaaagtgac-ccatgtctatccccttttgcaaaacgtcaattttgactcagtcaatcatatgtg 43916181  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 29182379 - 29182457
Alignment:
Q  29 catgtctatcccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtatattttgaatt 107  Q
    |||||||| ||||||||||||||  | |||||||||| ||||||| || |||||| | || |||||||| |||| ||||    
T  29182379 catgtctaccccttttgcaaaacgtcgattttgactttgtcaatcctacgtgtcatgtcaactgtgtatttttttaatt 29182457  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 21004608 - 21004541
Alignment:
Q  40 cttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtatattttgaatt 107  Q
    |||||||||||||| ||||||||||||||||||  |||||||||| ||| |||||||| |||||||||    
T  21004608 cttttgcaaaacactaattttgacttggtcaatactatgtgtcacaccatctgtgtattttttgaatt 21004541  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 3149212 - 3149155
Alignment:
Q  14 tggcaaaagtaacaccatgtctatcccttttgcaaaacaccaattttgacttggtcaa 71  Q
    |||||||||| || || |||||||||||||||||||||  ||||||||||||||||||    
T  3149212 tggcaaaagtgaccccgtgtctatcccttttgcaaaacgtcaattttgacttggtcaa 3149155  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 30793940 - 30794009
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtatattttgaatt 107  Q
    ||||||||||||||| |||||||||||| ||||| | ||||||||| |||| |||||||| |||| ||||    
T  30793940 cccttttgcaaaacatcaattttgacttagtcaaacctatgtgtcatgccaactgtgtattttttaaatt 30794009  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 30796205 - 30796155
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgcca 88  Q
    ||||||||||||||||| |||||||||| ||||| | ||||||||| ||||    
T  30796205 cccttttgcaaaacaccgattttgacttagtcaaacctatgtgtcatgcca 30796155  T

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Target: scaffold0050 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 80973 - 80928
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtca 83  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  80973 cccttttgcaaaacaccaattttgacttggtcaatcctatgtgtca 80928  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 46171440 - 46171371
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtatattttgaatt 107  Q
    |||||||||||||||| ||||||||| ||||||||| |||| ||||||||| |||||||| || ||||||    
T  46171440 cccttttgcaaaacactaattttgacctggtcaatcctatgcgtcacgccaactgtgtattttctgaatt 46171371  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 10614869 - 10614919
Alignment:
Q  14 tggcaaaagtaacaccatgtctatcccttttgcaaaacaccaattttgact 64  Q
    |||||||||| || ||||||||| ||||||||||||||| |||||||||||    
T  10614869 tggcaaaagtgaccccatgtctaccccttttgcaaaacatcaattttgact 10614919  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 22813251 - 22813193
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgta 96  Q
    |||||||| || || ||||| ||||||||||||||| |||||||| ||||| |||||||    
T  22813251 cccttttgtaatactccaatcttgacttggtcaatcctatgtgtctcgccacctgtgta 22813193  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 22099018 - 22099063
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtca 83  Q
    |||||||||||||||||||||||||  |||| |||| |||||||||    
T  22099018 cccttttgcaaaacaccaattttgatctggttaatcctatgtgtca 22099063  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 21844321 - 21844265
Alignment:
Q  40 cttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgta 96  Q
    |||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||    
T  21844321 cttttgcaaaatcccaattttgacttggtcaatcctatgtgtctcgccagctgtgta 21844265  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 3488100 - 3488188
Alignment:
Q  14 tggcaaaagtaacaccatgtctatcccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgccagctgtgtatatttt 102  Q
    |||||||||| || |||||| || || |||||||||||  |||||||||||| ||||||| ||  ||||| |||| |||||||| ||||    
T  3488100 tggcaaaagtgaccccatgtttaccctttttgcaaaacttcaattttgactttgtcaatcctacatgtcatgccaactgtgtatttttt 3488188  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 19758338 - 19758374
Alignment:
Q  41 ttttgcaaaacaccaattttgacttggtcaatcatat 77  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  19758338 ttttgtaaaacaccaattttaacttggtcaatcatat 19758374  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 37023772 - 37023722
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgcca 88  Q
    |||||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  37023772 cccttttgcaaaacaccaattttgacttggtcaaacctatgtgtcatgcca 37023722  T

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Target: scaffold0151 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 38326 - 38278
Alignment:
Q  38 cccttttgcaaaacaccaattttgacttggtcaatcatatgtgtcacgc 86  Q
    ||||||||||||||  |||||||||||| ||||| |||||||| |||||    
T  38326 cccttttgcaaaacgtcaattttgacttagtcaaacatatgtggcacgc 38278  T

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